PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013219-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YC
Protein Properties Length: 283aa    MW: 31478.8 Da    PI: 5.5508
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013219-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC62.11.1e-196861898
                  NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                           ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +tl    ++++v++ ++fdfl d+v +
  SMil_00013219-RA_Salv  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCNRTYEVTLKRGAKTLSSLHLKQCVQSFNVFDFLRDTVHK 86
                           5789*************************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-26372IPR009072Histone-fold
SuperFamilySSF471139.84E-20488IPR009072Histone-fold
PfamPF008084.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCNRT YEVTLKRGAK  60
TLSSLHLKQC VQSFNVFDFL RDTVHKVPDL GGADAANEDK STTKRRKISE DEESGNEDGS  120
KRICMRETSQ TSSNGRSRGR GRGRGRGRGS RTLHKESLDQ YEKLEDNSDI SNQSGNNQKE  180
NLERSCSVVA DTAADSRTTG KKDADKAVVT FDLNVDLNEN GDYTLTLAGA PSDSSEKPSR  240
GTRHEDIPGW SLDSMERLAI DVVQLASLNK RMNEEDEDYD EEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147RGRGRGRGRGR
2139148RGRGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080490.11e-122dr1-associated corepressor
TrEMBLA0A4D8Y1K71e-131A0A4D8Y1K7_SALSN; Uncharacterized protein
STRINGMigut.N02403.1.p8e-93(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.13e-62NF-YC family protein