PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013219-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YC | ||||||||
Protein Properties | Length: 283aa MW: 31478.8 Da PI: 5.5508 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 62.1 | 1.1e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl ++++v++ ++fdfl d+v + SMil_00013219-RA_Salv 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCNRTYEVTLKRGAKTLSSLHLKQCVQSFNVFDFLRDTVHK 86 5789*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.1E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.84E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.5E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCNRT YEVTLKRGAK 60 TLSSLHLKQC VQSFNVFDFL RDTVHKVPDL GGADAANEDK STTKRRKISE DEESGNEDGS 120 KRICMRETSQ TSSNGRSRGR GRGRGRGRGS RTLHKESLDQ YEKLEDNSDI SNQSGNNQKE 180 NLERSCSVVA DTAADSRTTG KKDADKAVVT FDLNVDLNEN GDYTLTLAGA PSDSSEKPSR 240 GTRHEDIPGW SLDSMERLAI DVVQLASLNK RMNEEDEDYD EEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 147 | RGRGRGRGRGR |
2 | 139 | 148 | RGRGRGRGRG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080490.1 | 1e-122 | dr1-associated corepressor | ||||
TrEMBL | A0A4D8Y1K7 | 1e-131 | A0A4D8Y1K7_SALSN; Uncharacterized protein | ||||
STRING | Migut.N02403.1.p | 8e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7555 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 3e-62 | NF-YC family protein |