PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00013210-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 219aa MW: 24609.9 Da PI: 10.1235 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.1 | 7e-19 | 53 | 138 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA ++GF +r+ +s+ks+r+g+i++r + C + + +++ + +++ ++ r gC+a l vk+e+ g+w+v k++ +HnH+l SMil_00013210-RA_Salv 53 YYNEYAGRAGFLTRIISSRKSERDGSIVSRGLGCRNIPNIQKSGNI---SNEGGQKRRDGCTAILLVKRENGGRWVVRKFVRDHNHSL 137 8*********************************999888887766...6777888999****************************9 PP FAR1 90 a 90 + SMil_00013210-RA_Salv 138 V 138 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-16 | 53 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MLSVVVDVEA TPDGGNGLME ASVAGDFATC EAERNAEPYV GMVFETEAAA RAYYNEYAGR 60 AGFLTRIISS RKSERDGSIV SRGLGCRNIP NIQKSGNISN EGGQKRRDGC TAILLVKREN 120 GGRWVVRKFV RDHNHSLVAS LPKRRPTFDE KDKRIQELTA ELRVKKRLSA AYREQLLILM 180 KDVENHTDHL TSKVQMTRNN LKELEARRQQ LSNHNKPSL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073899.1 | 1e-124 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_011073901.1 | 1e-124 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_020548482.1 | 1e-124 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
TrEMBL | A0A4D9BF32 | 1e-134 | A0A4D9BF32_SALSN; Uncharacterized protein | ||||
STRING | Migut.N03107.1.p | 1e-121 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-42 | FAR1 family protein |