PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013181-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25167.8 Da PI: 9.8205 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.5e-14 | 124 | 213 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v+ +l lp++f ++h + ++ + l de+ ++ e k+ k++ l++GW++F+ +++L +gD +vF+l++ + SMil_00013181-RA_Salv 124 FVKPMLQSHVTGGFWLGLPRHFSTTHL--PSRDAAINLVDENDQVSETKYLALKTG----LSGGWRGFAIDHELVDGDALVFQLIDPT 205 89*********************9994..346679***************666666....************************9867 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f +v ++r SMil_00013181-RA_Salv 206 TF--KVYIIR 213 77..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-19 | 115 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-23 | 117 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.95E-24 | 122 | 213 | No hit | No description |
SMART | SM01019 | 8.7E-20 | 124 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-13 | 124 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 124 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVVGKKSAYE ETRQKRLEEN KKRMEELNLN KLAHALHTPK PSPMKKVKPK LPLDLSAVRR 60 SSRVAVMPPR SYKEVAVVEA MGKPRSYQRR DLLNRVYAGD EERQYAIQRA EDLQSSLDQD 120 IPTFVKPMLQ SHVTGGFWLG LPRHFSTTHL PSRDAAINLV DENDQVSETK YLALKTGLSG 180 GWRGFAIDHE LVDGDALVFQ LIDPTTFKVY IIRVNEPGDS SN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088274.1 | 1e-128 | B3 domain-containing protein At3g19184 isoform X2 | ||||
Swissprot | Q1G3M3 | 8e-81 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A4D9C1F3 | 1e-133 | A0A4D9C1F3_SALSN; Uncharacterized protein | ||||
STRING | XP_009772546.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-77 | B3 family protein |
Publications ? help Back to Top | |||
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