PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013180-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 366aa    MW: 41380.8 Da    PI: 10.0586
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013180-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.8e-16161250198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k ++ps+v    +l lpk+f++ h  + + ++ ++l de+g++++  +  ++++    l++GW++F  +++L  gD+++F+l+   
  SMil_00013180-RA_Salv 161 FVKCMLPSNVAHGFWLHLPKNFCSIHL-P-NHDTSIVLVDEWGNEYKTSYLLDRHG----LSAGWRGFSLSHRLLKGDILIFHLTAPC 242
                            89*********************6664.3.35568***************888888....***********************97633 PP

                            EE..EEEEE- CS
                     B3  89 efelvvkvfr 98 
                            +  l+v+++r
  SMil_00013180-RA_Salv 243 K--LKVHIVR 250
                            3..5888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-23154253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19155252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-24159250No hitNo description
PROSITE profilePS5086312.055161252IPR003340B3 DNA binding domain
SMARTSM010197.1E-17161252IPR003340B3 DNA binding domain
PfamPF023624.2E-13161250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEISKLKQEA NKIEAQTSDV SDYCAAGLTD SSHKQKKKRR RRRNVMQLEN KEKGVSKKLK  60
SLKSKDRQIL VKFACVIMCK LMPLSFIHGG LPYMPICCNV IGVPSVSGGL RASNNPKKSR  120
SCSARKRTRY TDLYDDVEAK YSVMERAERV LAHLENELPH FVKCMLPSNV AHGFWLHLPK  180
NFCSIHLPNH DTSIVLVDEW GNEYKTSYLL DRHGLSAGWR GFSLSHRLLK GDILIFHLTA  240
PCKLKVHIVR VNGADVVGAA LCLMNMDASE RRSNGEDLVK KDDRKQRKRR KTKYVEPYQL  300
GSASPVKNVK GKNSILSPVA DHSSTAFCSD VIEKGPEITN QRQTNDLCYP ETSFLRDHAR  360
EGVTCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440QKKKRRR
23540KKKRRR
33642KKRRRRR
43742KRRRRR
53859RRRRRNVMQLENKEKGVSKKLK
6282289DRKQRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088276.11e-143B3 domain-containing protein At3g19184 isoform X1
TrEMBLA0A4D9C0J01e-163A0A4D9C0J0_SALSN; Uncharacterized protein
STRINGXP_009612758.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-33B3 family protein