PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013179-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 397aa MW: 44898.2 Da PI: 6.3782

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013179-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.5	2.2e-17	35	125	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l++s+ + + l lpkkf++ h + ++ +++l de+ ++++ k+++rk++ l++GW++F a++L egD +vF+l++ SMil_00013179-RA_Salv 35 FMKQLLKSHLSGKFYLGLPKKFCDMHL--PSQDDMIILVDENEQEFSAKYSVRKNR----LSGGWRGFSIAHNLLEGDALVFHLIEPC 116 89*******************9994..235669***********777777....**********************9988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ SMil_00013179-RA_Salv 117 KF--RVYIVRA 125 88..8888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.35E-22	31	126	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.5E-19	31	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.74E-26	33	124	No hit	No description
PROSITE profile	PS50863	12.478	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-15	35	125	IPR003340	B3 DNA binding domain
SMART	SM01019	2.7E-22	35	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MRTTADHHSC FEFNSSSLEQ AKGVQADSLA QFPSFMKQLL KSHLSGKFYL GLPKKFCDMH 60 LPSQDDMIIL VDENEQEFSA KYSVRKNRLS GGWRGFSIAH NLLEGDALVF HLIEPCKFRV 120 YIVRASRLTE DDGIGLQTND FQNGKPTSTL KVEDQMEANA CTGKTARPPY LNWLAMDSHQ 180 GTKKARLNSD CKLEIDQSGK GDYPFSPSVP EGVRYSEPVV FFEDIKCFED FKIQVDGLVL 240 DSQISKNLRV KYFKLCCSQN MSLHGHLIKG LSGKLAVVMI SETISIADAI RSADLATPLH 300 YLECWDKTLK AFEDLGMAVG FLRDRLHKLL NLSHESQVTT ESKRTKRVQA DEEINNLETT 360 SLNVEAFVVS LEAEIEALNL KNEKLDFEFR RIAQVPW

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MRTTADHHSC FEFNSSSLEQ AKGVQADSLA QFPSFMKQLL KSHLSGKFYL GLPKKFCDMH  60
LPSQDDMIIL VDENEQEFSA KYSVRKNRLS GGWRGFSIAH NLLEGDALVF HLIEPCKFRV  120
YIVRASRLTE DDGIGLQTND FQNGKPTSTL KVEDQMEANA CTGKTARPPY LNWLAMDSHQ  180
GTKKARLNSD CKLEIDQSGK GDYPFSPSVP EGVRYSEPVV FFEDIKCFED FKIQVDGLVL  240
DSQISKNLRV KYFKLCCSQN MSLHGHLIKG LSGKLAVVMI SETISIADAI RSADLATPLH  300
YLECWDKTLK AFEDLGMAVG FLRDRLHKLL NLSHESQVTT ESKRTKRVQA DEEINNLETT  360
SLNVEAFVVS LEAEIEALNL KNEKLDFEFR RIAQVPW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836956.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A022RBI9	1e-178	A0A022RBI9_ERYGU; Uncharacterized protein
STRING	Migut.B00331.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-36	B3 family protein