PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013026-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 173aa MW: 18793.2 Da PI: 8.6972 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.8e-34 | 31 | 123 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+++++ed++++++isws+ nsf+v+d+ ++ +Lpk+Fkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F g SMil_00013026-RA_Salv 31 FLTKIFDMVEDSSTDSVISWSAARNSFIVWDPYALSAALLPKFFKHANFSSFVRQLNTYGFRKVDADR---------WEFANEGFLGG 109 9********************999*****************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 kk+ll++ikr++++ SMil_00013026-RA_Salv 110 KKHLLKTIKRRRNA 123 ***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.0E-53 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.3E-35 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-32 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-18 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.3E-30 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEGAAVKVEV DGAAATPRPM ESLYDLGTPP FLTKIFDMVE DSSTDSVISW SAARNSFIVW 60 DPYALSAALL PKFFKHANFS SFVRQLNTYG FRKVDADRWE FANEGFLGGK KHLLKTIKRR 120 RNASQSSTCH QGGGGGGGGG GGGGAPCVEV GRYGKEEEVE RLKRDRDVLM AQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 28 | 120 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 28 | 120 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 28 | 120 | 26 | 129 | Heat shock factor protein 1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016537779.1 | 1e-77 | PREDICTED: heat shock factor protein HSF30 isoform X2 | ||||
Swissprot | P41152 | 7e-77 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A1U8DRZ1 | 4e-76 | A0A1U8DRZ1_CAPAN; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A1U8E1Z9 | 3e-76 | A0A1U8E1Z9_CAPAN; heat shock factor protein HSF30 isoform X2 | ||||
TrEMBL | A0A2G2YWS3 | 4e-76 | A0A2G2YWS3_CAPAN; heat shock factor protein HSF30 isoform X1 | ||||
TrEMBL | A0A2G3BRR5 | 4e-76 | A0A2G3BRR5_CAPCH; Heat shock factor protein HSF30 | ||||
STRING | XP_004291051.1 | 8e-75 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-69 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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