PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012942-RA_Salv
Common NameMYB97
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 189aa    MW: 20986.1 Da    PI: 4.6096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012942-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-094272448
                           HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                           W++Ia++++ gRt++++k++w+++l
  SMil_00012942-RA_Salv  4 WSLIAAHLP-GRTDNEIKNYWNSHL 27
                           *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.88131IPR017930Myb domain
SuperFamilySSF466892.53E-7332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-12427IPR009057Homeodomain-like
CDDcd001679.99E-7427No hitNo description
PfamPF002494.0E-7427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTWWSLIAAH LPGRTDNEIK NYWNSHLSRK IHSFRRPNPN FIPPPPSSKK ATSVNRRGSR  60
KRPGHQEDAA VVMPTTPTPE REAAGRIATE ERESGSSISM LGDIVEDLSG LWGPEFEISR  120
VGPGSENGDT GETSFKCNEF GLGETGSGLG VSSEIYENTF SWMLDDDCDE IWDSTHQGLD  180
DVMFSWLLS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594510.0KF059451.1 Salvia miltiorrhiza MYB-related transcription factor (MYB97) mRNA, complete cds.
GenBankKF0595610.0KF059561.1 Salvia miltiorrhiza MYB-related transcription factor (MYB97) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058990.16e-19myb-related protein Zm38-like
TrEMBLA0A059PRU91e-133A0A059PRU9_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-13myb domain protein 111
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]