PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012916-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 293aa MW: 31476.4 Da PI: 9.8235

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012916-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	234	255	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++far G+Ck G +C F H+ SMil_00012916-RA_Salv 234 RPCMYFAR-GFCKNGTSCMFLHC 255 69****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.821	230	257	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0043	232	256	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MHSFQANIEI TGTSWRALTT GTIEVYFNQF VLGSYPSMLE RTGVRYRTRH TSQRIARYHQ 60 PRRAFAAAAK KPATAGTQPQ LRVQPTLDLN AFSKACLGII PSSKPFSSPR ILIPNNGFHF 120 SNPSPSRSSP TPTLSPSPSP SPRPFSYAAA LNASTANAHS PASSFNFYGG AGTELPFLDD 180 SAVDPVMSPS GRSDSLLFPY GEEPSPHPFH RRSSSVNDAA FLANMEEGGG FGWRPCMYFA 240 RGFCKNGTSC MFLHCGDAAA QEVGSPGRAL AGFPALAGFP AVLGLSGRWH HGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080366.1	4e-57	zinc finger CCCH domain-containing protein 22-like
Refseq	XP_020550741.1	4e-57	zinc finger CCCH domain-containing protein 22-like
TrEMBL	A0A022S2U0	1e-52	A0A022S2U0_ERYGU; Uncharacterized protein
STRING	Migut.D00630.1.p	2e-53	(Erythranthe guttata)