PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012801-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 537aa    MW: 59382 Da    PI: 7.4449
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012801-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31164220259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dg+ WrKYGqK+vkgse+prsYY+Ct a+Cpv+kkvers+ d+++ ei+Y+g+Hnh+
  SMil_00012801-RA_Salv 164 EDGFYWRKYGQKHVKGSEYPRSYYKCTNANCPVTKKVERSH-DGHIAEIVYKGTHNHP 220
                            7****************************************.***************8 PP
2WRKY413.8e-13304328226
                            --SS-EEEEEEE--TT-SS-EEEEE CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYr 26 
                            +Dgy+WrKYGqK+vkg+++p +YY 
  SMil_00012801-RA_Salv 304 EDGYRWRKYGQKVVKGNPNPSGYYE 328
                            8***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-27152222IPR003657WRKY domain
PROSITE profilePS5081123.56158222IPR003657WRKY domain
SuperFamilySSF1182904.84E-25159222IPR003657WRKY domain
SMARTSM007741.5E-34163221IPR003657WRKY domain
PfamPF031061.8E-24164220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-14288328IPR003657WRKY domain
SuperFamilySSF1182902.09E-10297328IPR003657WRKY domain
PROSITE profilePS5081117.086298344IPR003657WRKY domain
SMARTSM007741.2E-5303339IPR003657WRKY domain
PfamPF031061.4E-8304328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAPFIKEEEE FDSINSNPIS ITIAEKRAGA SIAERRAAKC GFNASSVNAA ALCPPPYFTV  60
PPGLSPSALL DSPVMLPNAE AQMSPTTGTF HPLPMHEGLR QLKITSASNG KKTCSSETNS  120
MSDSNYKEFE HGNKDYVESS EVMMLDDIEK KNAQKEVSKM INSEDGFYWR KYGQKHVKGS  180
EYPRSYYKCT NANCPVTKKV ERSHDGHIAE IVYKGTHNHP QPKQMPIDVV VDDVSSLSSS  240
TLTAASSSNH DFPDPPDREV PDVEAEAAKK RKRDSEMTMA AVPRSTAREP KVVVQLESEI  300
DILEDGYRWR KYGQKVVKGN PNPSGYYENV RPLMLDCSTH GSNIWSTGTF ITNVRFTEEL  360
LQVHDGKLPS EKACRESRQR HKIGDHNLRG QAHTRGSFGQ KRHQLGHGGG ESGAAIKAAA  420
AGKQQLVQDY LDRKPMFNYS SGGDLSFGAS SPYPLPSFPP FHSMPYASAL AYSKLYPEYM  480
PMPMPMPMPM SMPMPMPSSS PSCMPPFRYG GEPQLKPKEE HDQLYATCLA IPNNGTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-161652221674WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231830.0KM823183.1 Salvia miltiorrhiza WRKY protein (WRKY60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834461.17e-80PREDICTED: probable WRKY transcription factor 25
TrEMBLA0A0D5YA290.0A0A0D5YA29_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-48WRKY DNA-binding protein 26