PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012717-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 408aa    MW: 46067.3 Da    PI: 9.993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012717-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.4e-32342399359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  SMil_00012717-RA_Salv 342 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 399
                            9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.6E-18293338IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-34328400IPR003657WRKY domain
PROSITE profilePS5081130.389335401IPR003657WRKY domain
SuperFamilySSF1182902.09E-27338400IPR003657WRKY domain
SMARTSM007741.3E-39340400IPR003657WRKY domain
PfamPF031061.3E-27342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
LNLLVSAFGF SVSASFESVY LELLQHICYF AGSCHFWFWE LGFYFCGLLL WGVRVMMEEV  60
EKANIAAVES CHRVINILNQ AQDQNLSGNL VEQTGEAVQR FKKVVSLLNS SCGHARVRKS  120
RKIQPPFPPN IFLETPIFRN DDHRHHQQPK PLHLLQINPV DTNRRQESVS IAKNSLTLGN  180
PSLELSSHGK NLRLSQQTPL PNYHFLQQQQ RFQLQQQQQQ LKQQQQQAEL VYRRSNSGIS  240
LNFDSSSCTP TMSSTRSFIS SLSMDGSVAN VDGSAFRLIG AARSADQASF HHKRRCAGRG  300
EDGSVKCGGS GRCHCSKKRK HRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP  360
RGYYKCSSMR GCPARKHVER CLEDPSMLIV TYEGEHNHPR LPSQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-203384021275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231720.0KM823172.1 Salvia miltiorrhiza WRKY protein (WRKY49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080000.10.0probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-122WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0D5YA320.0A0A0D5YA32_SALMI; WRKY protein
STRINGMigut.N02187.1.p1e-174(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-122WRKY DNA-binding protein 21