PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012676-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 10103.4 Da PI: 9.0012 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.7e-09 | 10 | 54 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 ++W++ E + + +a +++ + +W+ +ar +g Rt++++k ++ SMil_00012676-RA_Salv 10 MKWSAKENKDFEKALAEFVEDtpeRWANVARAVG-SRTPEEVKAHY 54 69****************99999***********.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.42E-10 | 5 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.527 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 2.9E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-7 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.52E-6 | 11 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-6 | 11 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
LSRKMASSSM KWSAKENKDF EKALAEFVED TPERWANVAR AVGSRTPEEV KAHYEILLED 60 LKHIESGRVP FPNYRNTPTQ DEKLKLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-33 | 7 | 77 | 6 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970206.1 | 5e-34 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 4e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A4D9AD43 | 1e-36 | A0A4D9AD43_SALSN; Uncharacterized protein | ||||
STRING | Migut.N01243.1.p | 3e-33 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-26 | RAD-like 1 |
Publications ? help Back to Top | |||
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