PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012675-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 96aa    MW: 11038.5 Da    PI: 9.5765
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012675-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-081357344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +WT +E +l+ +a +++  +   +W  +ar +g g++++++k ++
  SMil_00012675-RA_Salv 13 SWTVQENKLFEKALARFDRDtpdRWQNVARAVGGGKSAEEVKMHY 57
                           6*****************99**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.829661IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.1E-4961IPR009057Homeodomain-like
SMARTSM007172.1E-71063IPR001005SANT/Myb domain
CDDcd001672.71E-51357No hitNo description
PfamPF002491.6E-61357IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-111369IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASTSLSSRR PASWTVQENK LFEKALARFD RDTPDRWQNV ARAVGGGKSA EEVKMHYDIL  60
IEDLRRIESG HVPIPNYSNT TTTAEEEKRL LKYLKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-29196192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830960.12e-48PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1735e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H3U05e-54A0A2G9H3U0_9LAMI; Uncharacterized protein
STRINGMigut.N01244.1.p7e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-34RAD-like 6