PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012619-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 279aa    MW: 30395.2 Da    PI: 8.9543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012619-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12556147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT+eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  SMil_00012619-RA_Salv  5 KQKWTAEEEEALRAGVAKHGAGKWKNIQRDPEfnhllFARSNIDLKDKWRNL 56
                           79******************************99*9977***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.471161IPR017930Myb domain
SuperFamilySSF466892.69E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-13456IPR009057Homeodomain-like
SMARTSM007177.1E-7459IPR001005SANT/Myb domain
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116601.02E-20656No hitNo description
SMARTSM005261.4E-14117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.854119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.8E-12120187IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF466892.69E-14121153IPR009057Homeodomain-like
PfamPF005384.8E-9122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LFARSNIDLK DKWRNLSVAS  60
GQGPRDKSKT SKGKSNPADT PSAPLPIAQT SGSVAPSSKG ASTDVVMLDS SRPLPEGISA  120
SKYNTMIFEA LSTLKDLNGS DSSAIASFIE QRHEVPPNFR RALTSRLRTL VQQDKLEKVQ  180
NHYKIKNGAA LDTRPPAPRQ KDVQPRPIQS IGYLGDTVEE AAASAAYKIA EAENKSFVAA  240
ESVKEAERVA RMAEDMESLL QFAMDCFDQS SGGEILLMA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093763.11e-166telomere repeat-binding factor 4
TrEMBLA0A2G9HZM41e-169A0A2G9HZM4_9LAMI; Uncharacterized protein
STRINGMigut.L01522.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.27e-64MYB_related family protein