PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012589-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 133aa MW: 15450.9 Da PI: 10.0594 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.3e-18 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll d+v+++G g W++++ + g++R++k+c++rw++yl SMil_00012589-RA_Salv 45 KGAWTKEEDVLLRDCVHKYGEGKWHLVPLRAGLKRCRKSCRLRWLNYL 92 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.731 | 40 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 42 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-17 | 45 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.24E-21 | 46 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-11 | 47 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-7 | 95 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGKVTRWVRS MMGGSDESSK SDPFCCLDEM EDTNNNNNNG VGVRKGAWTK EEDVLLRDCV 60 HKYGEGKWHL VPLRAGLKRC RKSCRLRWLN YLRPNLKRGF FTKDEVDLIV RLHKLLGNRQ 120 VLVSSYIVQN MHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-13 | 45 | 127 | 7 | 88 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099468.1 | 2e-44 | transcription factor MYB1 | ||||
Swissprot | Q9FNV9 | 5e-39 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2G9H2Q5 | 1e-44 | A0A2G9H2Q5_9LAMI; Transcription factor, Myb superfamily | ||||
TrEMBL | A0A2G9HVP6 | 1e-44 | A0A2G9HVP6_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.H00279.1.p | 5e-44 | (Erythranthe guttata) | ||||
STRING | Migut.H00283.1.p | 6e-43 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-41 | myb domain protein 113 |
Publications ? help Back to Top | |||
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