PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012589-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 133aa    MW: 15450.9 Da    PI: 10.0594
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012589-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-184592148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd ll d+v+++G g W++++ + g++R++k+c++rw++yl
  SMil_00012589-RA_Salv 45 KGAWTKEEDVLLRDCVHKYGEGKWHLVPLRAGLKRCRKSCRLRWLNYL 92
                           79*********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7314096IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-214294IPR009057Homeodomain-like
SMARTSM007171.1E-144494IPR001005SANT/Myb domain
PfamPF002495.7E-174592IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-2146121IPR009057Homeodomain-like
CDDcd001672.10E-114792No hitNo description
Gene3DG3DSA:1.10.10.609.7E-795119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGKVTRWVRS MMGGSDESSK SDPFCCLDEM EDTNNNNNNG VGVRKGAWTK EEDVLLRDCV  60
HKYGEGKWHL VPLRAGLKRC RKSCRLRWLN YLRPNLKRGF FTKDEVDLIV RLHKLLGNRQ  120
VLVSSYIVQN MHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1345127788B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099468.12e-44transcription factor MYB1
SwissprotQ9FNV95e-39MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G9H2Q51e-44A0A2G9H2Q5_9LAMI; Transcription factor, Myb superfamily
TrEMBLA0A2G9HVP61e-44A0A2G9HVP6_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00279.1.p5e-44(Erythranthe guttata)
STRINGMigut.H00283.1.p6e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-41myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]