PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012559-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 23712.9 Da PI: 10.392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.8 | 3.3e-07 | 152 | 186 | 4 | 41 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 +h+ +Er RR+ri +++ L+ l+P + ++ K +K SMil_00012559-RA_Salv 152 SHSLAERVRRERISERMKLLQALVPGC---DKVKFNKF 186 8*************************9...99998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.28E-4 | 146 | 182 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-10 | 146 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.693 | 148 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 151 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-4 | 152 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAAFSSSFQH LDASSSSVFL SRPNSSSSSS PSTTINSMCA LFHDPNNALS HQFHHLHHGT 60 TPSSSNNNIN DSAPLNAAAA TNKNSMDSSI SVVTHKNRQT KKRKSNSAQS KDMRELVKGK 120 KQKKVKDCEE KKEGEEKGYI HVRARRGQAT DSHSLAERVR RERISERMKL LQALVPGCDK 180 VKFNKFVLIS LSICFTHTHI YIYVCIYMSL LF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257447 | 0.0 | KP257447.1 Salvia miltiorrhiza clone 14 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022889922.1 | 5e-36 | transcription factor bHLH137-like | ||||
TrEMBL | A0A0H3YB18 | 1e-126 | A0A0H3YB18_SALMI; Basic helix-loop-helix transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-22 | bHLH family protein |