PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012548-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 21185 Da PI: 8.4043 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 34 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k SMil_00012548-RA_Salv 34 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 86 55699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2e-39 | 33 | 123 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk+++da+++e+++L++ev +Lr+ SMil_00012548-RA_Salv 33 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEFDAVSREKHKLHQEVLALRA 120 9**************************************************************************************8 PP HD-ZIP_I/II 90 elk 92 lk SMil_00012548-RA_Salv 121 ILK 123 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 6 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-20 | 18 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-18 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-16 | 33 | 89 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 34 | 86 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.9E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.5E-8 | 88 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MIYSGMEMKQ AMVAEKSNSN SSMSINYGGG DPKKKRLSTE QLESLENSFQ EEIKLDPDRK 60 MKLAKELGLQ PRQIAVWFQN RRARWKGKQL ERLYDALKQE FDAVSREKHK LHQEVLALRA 120 ILKDQVAKKQ VSTDVSGEET VESTSIPSSE KGRGEGNNQM GECNYVLNVE DYSPLIMTPY 180 NWGALP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARWKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094442.1 | 1e-91 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 6e-49 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A4D9C620 | 1e-105 | A0A4D9C620_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.J00491.1.p | 3e-87 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-51 | homeobox 51 |
Publications ? help Back to Top | |||
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