PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012472-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 405aa    MW: 44533 Da    PI: 5.8135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012472-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.24.7e-88444012345
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalkl..fs 85 
                            ++lL++cA+a++++d++laq++L+ l+++a pdgd+ qRl+  f++AL ar ars+s +l  a+ ++ +++ ++  +++++ +l  ++
  SMil_00012472-RA_Salv  44 EQLLVHCATAIETNDATLAQQILWVLNNIAPPDGDSSQRLTCAFLRALIARAARSGScKLLTAVaNVHAADLSTANHKFSIIELagYV 131
                            79****************************************************54323344442444444444555555555567** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAe 170
                            +++P+++f++ +aN a+ eaveg+  vHi+Df++++++Q p+L++a+asR +gpp +++T+ g+ e +      ++ee+g +L +fA+
  SMil_00012472-RA_Salv 132 DLTPWHRFGFTAANAAVIEAVEGHPVVHIVDFSLTHCMQIPTLIDAIASRLDGPPLVKLTVAGATEDFppmLDLSYEELGLKLVNFAR 219
                            ****************************************************************888898888999************ PP

                   GRAS 171 elgvpfefnvl...vakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhn 249
                            + +v +ef+v+    ++ +++l +e+Lr       gEal++n++++lh++++e+++ +    r  +Lk+v++l+P+ vvvv+++ad +
  SMil_00012472-RA_Salv 220 SRNVAMEFRVIpssSSDGFSSL-IEQLRAIGagagGEALVINCQMMLHYIPEETLANAPnsLRAMFLKAVRGLNPRAVVVVDEDADFT 306
                            **********965444455555.777766556779******************99876555899************************ PP

                   GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                            s++++ r+  a +y +  +d++e+ lpres++r+++E+  + ++i+nv+a+eg +r+er e  ekW +r++ aGF+ + +s++a++++
  SMil_00012472-RA_Salv 307 SGNLVSRLRAAYNYLWIPYDTVETFLPRESRQRQWYEAD-MWWKIENVIAQEGPRRVERLEPREKWVQRMRGAGFRGAGFSDDAVAEV 393
                            ***************************************.9*********************************************** PP

                   GRAS 338 klllrkvk 345
                            k++l +++
  SMil_00012472-RA_Salv 394 KSMLDEHA 401
                            ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.61417405IPR005202Transcription factor GRAS
PfamPF035141.6E-8544401IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMQFTESFPP PHQIPPFPNL KARAWPGLPP PKQLSSFGDA NCMEQLLVHC ATAIETNDAT  60
LAQQILWVLN NIAPPDGDSS QRLTCAFLRA LIARAARSGS CKLLTAVANV HAADLSTANH  120
KFSIIELAGY VDLTPWHRFG FTAANAAVIE AVEGHPVVHI VDFSLTHCMQ IPTLIDAIAS  180
RLDGPPLVKL TVAGATEDFP PMLDLSYEEL GLKLVNFARS RNVAMEFRVI PSSSSDGFSS  240
LIEQLRAIGA GAGGEALVIN CQMMLHYIPE ETLANAPNSL RAMFLKAVRG LNPRAVVVVD  300
EDADFTSGNL VSRLRAAYNY LWIPYDTVET FLPRESRQRQ WYEADMWWKI ENVIAQEGPR  360
RVERLEPREK WVQRMRGAGF RGAGFSDDAV AEVKSMLDEH AAGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-462640372444Protein SHORT-ROOT
5b3h_B3e-462640318390Protein SHORT-ROOT
5b3h_E3e-462640318390Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627402e-41AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099354.10.0scarecrow-like protein 32
SwissprotQ9SN221e-168SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2Z7B8430.0A0A2Z7B843_9LAMI; Scarecrow-like protein 32
STRINGMigut.H00362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-159GRAS family protein