PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012369-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28942.7 Da    PI: 6.1795
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012369-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-1886139356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  SMil_00012369-RA_Salv  86 KKRRLNLEQVKTLEKNFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139
                            4557899**********************************************9 PP
2HD-ZIP_I/II131.14.3e-4285177193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k+en++L++++++L+
  SMil_00012369-RA_Salv  85 EKKRRLNLEQVKTLEKNFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKAENDALQAHNHKLH 172
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelke 93 
                            +e+++
  SMil_00012369-RA_Salv 173 AEIMA 177
                            99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-1979143IPR009057Homeodomain-like
PROSITE profilePS5007116.94181141IPR001356Homeobox domain
SMARTSM003893.9E-1784145IPR001356Homeobox domain
PfamPF000464.9E-1586139IPR001356Homeobox domain
CDDcd000866.94E-1686142No hitNo description
Gene3DG3DSA:1.10.10.606.0E-1988148IPR009057Homeodomain-like
PRINTSPR000319.1E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000319.1E-6121137IPR000047Helix-turn-helix motif
PfamPF021839.5E-16141181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
LMTCSTEMAF FHPNFMLQTP HQDHDHTHPS TSLPPLIPSS TPQDQYHGVG SLIGKRSNVC  60
LEEMMKNENE NVQDELSDDG SQIGEKKRRL NLEQVKTLEK NFEVGNKLEP ERKMQLARAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDLL KRQFDAVKAE NDALQAHNHK LHAEIMALKS  180
REATDLCINL NKETEGSCSE NSSEIKLHIS TAPPDPKLDQ TVKEESLCNM FCGMDDQPGF  240
WPWLDQQNFK F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-128homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-104ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL11e-128A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGXP_002520111.11e-114(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-100HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]