PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012314-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

STAT

Protein Properties

Length: 887aa MW: 100368 Da PI: 6.5291

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012314-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	187.6	1.4e-58	399	518	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfe 88 ldvvll+a+g v+k++evvasLlyad+g++ve++ dae+pLL+++dG+e++s++r +kl++GrasfklkisqLsskcdnrLfri+f+ SMil_00012314-RA_Salv 399 LDVVLLDAFGGHVNKELEVVASLLYADNGVPVENTTDAEPPLLMNCDGIEYASHNRLCKLINGRASFKLKISQLSSKCDNRLFRIMFD 486 8************************************************************************************* PP STAT 89 ipklkkypfleavskpirCisrsrntrssslt 120 +p l kypfl ++s pirC+srsrntr++s t SMil_00012314-RA_Salv 487 VPGLGKYPFLGTLSLPIRCVSRSRNTRTASIT 518 *************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	9.18E-5	133	270	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:3.30.505.10	1.1E-6	787	842	IPR000980	SH2 domain
SuperFamily	SSF55550	3.37E-8	789	855	IPR000980	SH2 domain
PROSITE profile	PS50001	10.834	789	846	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence Send to blast
LGRMSDFSGV EEKDYVSLKN LKVEFRRDDD AEEADGCFAL CFWIYIDSCV SFPSSILVQK 60 HPDVTCNMPF LYLDDKKKMK LFPLLFMHKE APIPDNPTPS TEIPCASTEI EFPMKKWVHV 120 GCEVFVLLVG RRSKDYVSLK NLKVEFRRDD DAEEADGCFA LCFWIYIDSC VSFPSSILVQ 180 KHPDVTCNMP FLYLDDKKKM KLFPLLFMHK EAPIPDNPTP STEIPCASTE IEFPMKKWVH 240 VGCEVLRDLM RLHVDGEIVG ENPLTCSFNK DLHTEGLKRL CLACPDENED ILHGYVHGLD 300 IMFRKPAIKN HYVKDPPLQL SIDHSSASEI EEDSDGVWSI VGGKPLVSKF IFLELKLLTL 360 SHALGCNLHQ CLRMRNEAQR DRNSFLNGLK ASCRRIFSLD VVLLDAFGGH VNKELEVVAS 420 LLYADNGVPV ENTTDAEPPL LMNCDGIEYA SHNRLCKLIN GRASFKLKIS QLSSKCDNRL 480 FRIMFDVPGL GKYPFLGTLS LPIRCVSRSR NTRTASITLR KSSNRTYYGN GCESPSPDDG 540 SMQLITNIVR EAKPSPSSKR IKLGQDVPFV MFKEEVSQAN KVHHSHGWTA NQDNAHAMSM 600 KRKPEDHCGT ENNSCASDNS EATNSDPRSM LSVSSPISDL IIFKYCLGGP TEKWHLLKEI 660 AISATEEQLT HFEKQVSLFS GCLHHRHQIK MAKRLVEEGI QAWTSVSGNN HHVLWENLAF 720 SINEQFMKIA CSTRPLMDQD LECLRRITGC RDAVLQEGFE RMWSWLFPVA FTLSQSAVNA 780 MWDSMSPIWI EGFITKEEAE SSLQGPGGLQ DPGTFLLRFP TSRSWPHPDA GNLVVTYVDN 840 DYTIRHRLLS FDFIHSSPSK ETSVKPLQDL LLQEPKLSRL GRVIRSE

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence Send to blast

LGRMSDFSGV EEKDYVSLKN LKVEFRRDDD AEEADGCFAL CFWIYIDSCV SFPSSILVQK  60
HPDVTCNMPF LYLDDKKKMK LFPLLFMHKE APIPDNPTPS TEIPCASTEI EFPMKKWVHV  120
GCEVFVLLVG RRSKDYVSLK NLKVEFRRDD DAEEADGCFA LCFWIYIDSC VSFPSSILVQ  180
KHPDVTCNMP FLYLDDKKKM KLFPLLFMHK EAPIPDNPTP STEIPCASTE IEFPMKKWVH  240
VGCEVLRDLM RLHVDGEIVG ENPLTCSFNK DLHTEGLKRL CLACPDENED ILHGYVHGLD  300
IMFRKPAIKN HYVKDPPLQL SIDHSSASEI EEDSDGVWSI VGGKPLVSKF IFLELKLLTL  360
SHALGCNLHQ CLRMRNEAQR DRNSFLNGLK ASCRRIFSLD VVLLDAFGGH VNKELEVVAS  420
LLYADNGVPV ENTTDAEPPL LMNCDGIEYA SHNRLCKLIN GRASFKLKIS QLSSKCDNRL  480
FRIMFDVPGL GKYPFLGTLS LPIRCVSRSR NTRTASITLR KSSNRTYYGN GCESPSPDDG  540
SMQLITNIVR EAKPSPSSKR IKLGQDVPFV MFKEEVSQAN KVHHSHGWTA NQDNAHAMSM  600
KRKPEDHCGT ENNSCASDNS EATNSDPRSM LSVSSPISDL IIFKYCLGGP TEKWHLLKEI  660
AISATEEQLT HFEKQVSLFS GCLHHRHQIK MAKRLVEEGI QAWTSVSGNN HHVLWENLAF  720
SINEQFMKIA CSTRPLMDQD LECLRRITGC RDAVLQEGFE RMWSWLFPVA FTLSQSAVNA  780
MWDSMSPIWI EGFITKEEAE SSLQGPGGLQ DPGTFLLRFP TSRSWPHPDA GNLVVTYVDN  840
DYTIRHRLLS FDFIHSSPSK ETSVKPLQDL LLQEPKLSRL GRVIRSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082815.1	0.0	uncharacterized protein LOC105165486
TrEMBL	A0A4D8Z7X7	0.0	A0A4D8Z7X7_SALSN; Uncharacterized protein
STRING	Migut.M00685.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	0.0	SH2 domain protein B