PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012309-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 335aa MW: 36710.9 Da PI: 9.7086

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012309-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	106	167	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss SMil_00012309-RA_Salv 106 KDQAINCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSSS 167 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	98	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	107	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
NKQSTAFPLF PPIIHKVSQL KKKKANIQTT QKHSFLASKT AADKLGEFSP SLCLFVITPP 60 FFPSSETSMD SAQWTQEFGV ARSMAEGGPN ACSSKPSTER KVRPQKDQAI NCPRCHSTNT 120 KFCYYNNYSL TQPRYFCKTC RRYWTEGGTL RNVPVGGGSR KNKRSSSSSS IITPHKLPDL 180 NPPFSSQNPN PKIHDQAGQD LNLGFQPDYT HFLDTSNANT SSSTTTTPLS PLNFFTNGGI 240 AARGFFPLHD QNSAIFASAG FPFQECKPPQ LSFPVAVGGS RTESSYNVPQ ENNANIGSLM 300 FTLGAARRNS SDQDQDKGHE NSNGFWNGML GGASW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022898416.1	7e-81	dof zinc finger protein DOF2.5-like isoform X1
TrEMBL	A0A4D8YDZ6	1e-115	A0A4D8YDZ6_SALSN; Uncharacterized protein
STRING	Migut.B01894.1.p	4e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	2e-43	Dof family protein