PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012153-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 338aa MW: 37169.3 Da PI: 8.4594 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.2e-08 | 265 | 313 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 r +W+teEd +l v ++G ++W+ Ia + R ++++ rw +++ SMil_00012153-RA_Salv 265 RRSWSTEEDAKLTASVLKHGERSWANIALLDFkNDRRANELSQRWSNLR 313 678************************9643357999999999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.157 | 260 | 317 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 261 | 317 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.43E-10 | 262 | 314 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-7 | 264 | 315 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 9.2E-6 | 268 | 315 | No hit | No description |
CDD | cd11660 | 3.31E-7 | 268 | 314 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MVDKSKKGKK GTFGEDDMSS VLARYSMNTV LGLLQEVEQA GGAKIDWHEA VKKSSTGISC 60 AREYQMLWRH LAYGEALTDQ LDDDAEPIDY DSDLEYEVEP SPAVGREASV EAAACVKTKI 120 PINYLYGLEL KPSHKLHNVL VGSLVFNSQC ISLFLTDTHL KPCLLFSVPT IKSMLIFVTV 180 LIASGYPNNS QLPNNSTIEA PLTINIPNTK AACASSDGSH LSDMMRGMNV SIPVSVQKQP 240 LSSGVIGEKR PIALAQMNLP SRRRRRSWST EEDAKLTASV LKHGERSWAN IALLDFKNDR 300 RANELSQRWS NLRKKQGNTK GGTSTQPSET QLAAAHRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082058.1 | 1e-110 | uncharacterized protein LOC105164926 | ||||
TrEMBL | A0A4D9APU1 | 1e-141 | A0A4D9APU1_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-45 | MYB_related family protein |