PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012105-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 415aa    MW: 44237.2 Da    PI: 10.1419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012105-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.84.4e-1170124155
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                            lv++L++cAeav+ +d + a+ lL++l+ +a   g+++qR+a++f+++La rla 
  SMil_00012105-RA_Salv  70 LVQQLISCAEAVACRDRAHASLLLSELRANALVFGSAFQRVASCFVQGLADRLAM 124
                            689**************************************************97 PP
2GRAS170.11.8e-52212363175330
                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            +f f+v v+++le+l++ + +v++gE+++Vn +lqlh +++es    +   +vL++v +lsPkv+vvveq+++hn++ Fl rf+eal+
  SMil_00012105-RA_Salv 212 KFGFSV-VHSNLESLTPADVKVERGEVVVVNTILQLHCVVKESRGALN---AVLQIVHELSPKVMVVVEQDSSHNGPFFLGRFMEALH 295
                            589999.799******************************88887777...9************************************ PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                            yy+a+fdsl+a lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+pvpl+
  SMil_00012105-RA_Salv 296 YYAAIFDSLDAVLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPVPLK 363
                            ******************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.28444387IPR005202Transcription factor GRAS
PfamPF035141.5E-870124IPR005202Transcription factor GRAS
PfamPF035146.1E-50212363IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
LTELSDGGGG GSVSIPRNGS AASLTSSGPQ IRDRIKTYSQ LYLEAEALAA EDGGRGGEGA  60
EGGNADGTKL VQQLISCAEA VACRDRAHAS LLLSELRANA LVFGSAFQRV ASCFVQGLAD  120
RLAMVQPLGA VGYAAPTMNI MDAASEKGRR RSASCTTCAR TSGPPVAKPN SQPGQAAGPA  180
PAPPRDRGGP LPRQVPRDRG RAGGVRGRGR GKFGFSVVHS NLESLTPADV KVERGEVVVV  240
NTILQLHCVV KESRGALNAV LQIVHELSPK VMVVVEQDSS HNGPFFLGRF MEALHYYAAI  300
FDSLDAVLPK YDTRRAKMEQ FYFAEEIKNI VSCEGPARVE RHERVDQWRR RMSRAGFQPV  360
PLKMARRPSS GSAASTPVRA TPPWRRKGAL SWAGNRSLSS LLPAGNAESG HFSMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-20703624328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027169295.11e-145DELLA protein RGL1-like
TrEMBLA0A4D9AP961e-164A0A4D9AP96_SALSN; DELLA protein
STRINGPOPTR_0015s10310.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-30scarecrow-like 3