PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012103-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 551aa    MW: 60824.4 Da    PI: 5.8644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012103-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-111761899
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           lp +f+++ ++   ++++  l+d++g++W+v+l  +  +g+  ++ GW+eF   +gLkeg  ++Fk+++ s f  +v++f +
  SMil_00012103-RA_Salv  1 LPPQFVQRVKHL-LTNQKTELKDSRGQRWSVTL--SLVDGSLAFQMGWEEFYLYHGLKEGQLLLFKYKE-SHF--TVRIFGT 76
                           688998888433.244579999***********..77777899***********************976.788..9999875 PP
2B333.76.3e-11460548998
                            HHHHTT-EE--HHH.HTT---..--SEEE.EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktlt.ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             v ++++lv+p +  ++  g++ ++ t++ l+d+  r W v +  r + gr  lt +W eF+++ ++k gD + F++++++ f ++v 
  SMil_00012103-RA_Salv 460 EVESQSLLVVPQSIGRRLRGQTVRGATVVfLRDSVRRLWPVVF--RENAGRRALTINWTEFCEQDNVKPGDKCEFQVENDTLFVYRVD 545
                            6788999***********666666666551677888*******..99999999***********************888788877777 PP

                            EE- CS
                     B3  96 vfr 98 
                            v r
  SMil_00012103-RA_Salv 546 VAR 548
                            765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-13179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-12179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.451177IPR003340B3 DNA binding domain
PfamPF023621.9E-9174IPR003340B3 DNA binding domain
CDDcd100173.58E-11174No hitNo description
SMARTSM010190.14177IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348452548IPR003340B3 DNA binding domain
SMARTSM010190.0065457550IPR003340B3 DNA binding domain
PfamPF023621.8E-9459546IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-9461548IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-6461544No hitNo description
Gene3DG3DSA:2.40.330.101.7E-9465540IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
LPPQFVQRVK HLLTNQKTEL KDSRGQRWSV TLSLVDGSLA FQMGWEEFYL YHGLKEGQLL  60
LFKYKESHFT VRIFGTSACE RTNFNNEMPG RRKKRKRCQG TTSEDEAHQT AGVKSDISIS  120
ASGDESQNRI TKLAVDLSFE MENGTFDAMK AEGAVIKLLD ASTETEQRDV FDNASDKGLS  180
LSSNWVLEPT NPAGRDEDAQ MGVIETDLIT RTTGDDAMEQ TKTTAEDAQM GVIEIDLITS  240
TTGDDAMEQT KTSAEDAQMG AIKTNLITSN TGDISIDKFV TALDAKTAIS HTEITDQIRK  300
KVGGTQMAHH SHQAGGRSGD AFMKRFNHDK PSDDNKMKKI MLKNVISVAF GKPEPFSLSP  360
SIGGSKISEG GHVTKSKFGD SFSSATFENP LGLHAIKKEV KMEDTADVFR QGSCGGKELP  420
PVCNQPQMIS PLVVKVEPDL PYETGILDTI SSSIRPFSAE VESQSLLVVP QSIGRRLRGQ  480
TVRGATVVFL RDSVRRLWPV VFRENAGRRA LTINWTEFCE QDNVKPGDKC EFQVENDTLF  540
VYRVDVARGS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RRKKRKR
29196RKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9AWE51e-142A0A4D9AWE5_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-10B3 family protein