PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012083-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 230aa MW: 23463 Da PI: 8.4938 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.7e-38 | 21 | 80 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC stntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rkn k+s SMil_00012083-RA_Salv 21 PEHLPCPRCSSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGSRKNAKRS 80 57899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.8E-33 | 23 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-19 | 28 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MATDTAERKA ARSGQAPPPE PEHLPCPRCS STNTKFCYYN NYNFSQPRHF CKACRRYWTH 60 GGTLRDIPVG GGSRKNAKRS RSSAAAAGGG AFSPSPHHDF RGFPGGASQL LVPFAADHGG 120 AGAFSGDAKM CGSFTSLLNT QGAGLWALGG FGLGLGHGFE EVGFGLGRAV WPFPGVVEGG 180 PASGGGGGGG GASVAGNTWQ LESGESGYSN GDCFALPDLA ISTPGGNFMK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP662922 | 5e-81 | KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099306.1 | 1e-111 | dof zinc finger protein DOF3.4 | ||||
Swissprot | Q39088 | 4e-52 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A4D8ZYI2 | 1e-113 | A0A4D8ZYI2_SALSN; Uncharacterized protein | ||||
STRING | Migut.H00486.1.p | 1e-108 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 2e-29 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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