PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011957-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 244aa    MW: 27134.3 Da    PI: 8.9836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011957-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20111161256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +++GVr+++ +g+W+AeIrdp+    r  r +lg++ taeeAa  +++a+ kl+g+
  SMil_00011957-RA_Salv 111 KFRGVRQRP-WGKWAAEIRDPC----RrVRLWLGTYNTAEEAAMVYDNAAIKLRGP 161
                            89*******.**********83....35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-29110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.393111168IPR001471AP2/ERF domain
SMARTSM003806.5E-39111174IPR001471AP2/ERF domain
CDDcd000181.36E-31111167No hitNo description
PfamPF008478.7E-13111160IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21111168IPR016177DNA-binding domain
PRINTSPR003674.5E-10112123IPR001471AP2/ERF domain
PRINTSPR003674.5E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDHSILYRPV KYTEHTQTTT KIMKQNPRKT HPNAPISVRI SVTDPDATDS SSDEDDDDLF  60
QKQRVKRYIT EIKMETAVSG VSANGGRSRA VETLRPKPKP MKTPNEAAPR KFRGVRQRPW  120
GKWAAEIRDP CRRVRLWLGT YNTAEEAAMV YDNAAIKLRG PDALTNFTTP PESNAASVSG  180
YDSGDESHII SSPVSVLRFK GSRSSEDTEP AGLSSQCSEY TDPGPPVPVL GRVKEEIRYN  240
SVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19110167159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-19107167162ATERF1
3gcc_A4e-19107167162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076033.11e-100ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE35e-53CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A4D9B7M91e-114A0A4D9B7M9_SALSN; Uncharacterized protein
STRINGMigut.F00247.1.p2e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-47cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]