PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011948-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 224aa    MW: 25368.3 Da    PI: 7.7895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011948-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.6e-122367345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +W+ +Ed+++ +a  +++ g   +W+ Ia++++ g++++++ks++ 
  SMil_00011948-RA_Salv 23 SWSRQEDKIFEKALVEFPEGfgdRWRMIAEYLP-GKSPEEVKSHYE 67
                           6********************************.**********96 PP
2Myb_DNA-binding422.2e-13129173347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  SMil_00011948-RA_Salv 129 PWTEDEHRLFLIGLDRYGKGDWRSISRNVVVTRTPTQVASHAQKY 173
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.3331674IPR017930Myb domain
SMARTSM007176.3E-92072IPR001005SANT/Myb domain
PfamPF002491.0E-92368IPR001005SANT/Myb domain
SuperFamilySSF466892.0E-112375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-72370IPR009057Homeodomain-like
CDDcd001671.84E-102370No hitNo description
PROSITE profilePS5129418.66122178IPR017930Myb domain
SuperFamilySSF466893.36E-16124178IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-17125176IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-10126172IPR009057Homeodomain-like
SMARTSM007178.2E-10126176IPR001005SANT/Myb domain
PfamPF002492.3E-11129173IPR001005SANT/Myb domain
CDDcd001678.73E-9129174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNFHRNMYSI DANSNLVSCD AASWSRQEDK IFEKALVEFP EGFGDRWRMI AEYLPGKSPE  60
EVKSHYEALL YDIAEIDSGR VELPSYSDES GSIGWEGEPA RSRTPGQISF GSPGNRSRHL  120
DVERKKGTPW TEDEHRLFLI GLDRYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRHTSG  180
KKERKRSSIH DITTAMDSLT VPPPAPTSLP SQGGYQAFNF SMPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1424931180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084236.11e-121transcription factor SRM1-like
SwissprotQ9FNN64e-60SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A4D8ZA531e-139A0A4D8ZA53_SALSN; Uncharacterized protein
STRINGMigut.F01593.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-70MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]