PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011928-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 322aa    MW: 33911.6 Da    PI: 9.2447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011928-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-066083225
                           -S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                           k ++C  f+ +  C++G++C+F H
  SMil_00011928-RA_Salv 60 KSKPCTKFFSMAGCPFGENCHFLH 83
                           67899999999************* PP
2zf-CCCH20.77.1e-07126151227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ f     Ck+ d+C+FaHg+
  SMil_00011928-RA_Salv 126 KTKLCNKFNSAEGCKFNDKCHFAHGE 151
                            89**********************96 PP
3zf-CCCH36.58e-12289313126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt+lC +f++ G C +GdrC+FaHg
  SMil_00011928-RA_Salv 289 FKTKLCENFSK-GSCTFGDRCHFAHG 313
                            69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.695885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6815886IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-55983IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-46083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-66083IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.48E-8124155IPR000571Zinc finger, CCCH-type
SMARTSM003560.0061124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206124152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-13125155IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-5126151IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-15191265IPR004088K Homology domain, type 1
SMARTSM003223.9E-13194264IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.7E-16194263IPR004088K Homology domain, type 1
PROSITE profilePS5008414.634195259IPR004088K Homology domain, type 1
CDDcd001053.40E-15197259No hitNo description
PfamPF000132.4E-12197261IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.7E-16283319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8288318IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7288314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474288315IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9289313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
LVVLESNIRL FCFEFELRSA NFEAMDIRKR ARGEFDPNAN GGSKRSKPEM DSLSGGIGSK  60
SKPCTKFFSM AGCPFGENCH FLHFVPGGYK AVAQMMNLAP APAPAFKTPA GPPPIQNGSS  120
PAAAVKTKLC NKFNSAEGCK FNDKCHFAHG ERELGRPIAH SQPQEDARAM GSVPPYFGAR  180
ADPPVQGLAA GFGASATAKI SVDASLAGAI IGKGGVNSKQ ICRQTGAKLS IRDHETDPGL  240
RNIELEGTFE QIKQASTMVR ELIVSIGAGN APGKTFGGGG GPPTPGSNFK TKLCENFSKG  300
SCTFGDRCHF AHGAAELRKT GF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-161zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D9B8X61e-177A0A4D9B8X6_SALSN; Uncharacterized protein
STRINGcassava4.1_012954m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-58C3H family protein