PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011916-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 561aa MW: 64085.7 Da PI: 6.5433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011916-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.9e-27	78	164	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+ vGFsvrk+ ++sk +g++++r+f+Cs++g+r+++k++ ++ +++r+etrtgC a ++v++++dgk+ vt++e eHnHe SMil_00011916-RA_Salv 78 RFYHKYAELVGFSVRKDWVNRSKVHGRVMSRKFTCSRQGHRKKDKRD-VNVKKHRKETRTGCLAYMVVTRQTDGKYLVTQFEAEHNHE 164 5*****************************************999.999**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-24	78	164	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MFAFAVGRRA MDVNEGEEVM NHENDVDVRM SNNLDLNVEH DCRSPKSSNV NGVRSRRSLK 60 HEVLKLGTEF DSDEQAYRFY HKYAELVGFS VRKDWVNRSK VHGRVMSRKF TCSRQGHRKK 120 DKRDVNVKKH RKETRTGCLA YMVVTRQTDG KYLVTQFEAE HNHEDVNLTK AERLLESPSG 180 KGNSTEVSET DSLKNSEIQS KLSFQMLAWD SMLERHGLCN NAWLRWMYRE KEKWAVAYGR 240 NTFFIERNGT HLVELLSDKL RSCLGLDIDV LQFFKHFENV VNEQRYRELE STLDMGRHAP 300 VLMANAILLK HPSETYTPKA FEVFQREYEK CLNVIIDKAA ESDPAFEYAS RQLDEVTRGI 360 ERILNFKTFE EAKGPCASDN ELADVGIDRN DFEDQDVDVM KGTTEAGSIV PDKDQLNHCG 420 EQIPGVGGNL NIHPSPPETV LSVACAPPTY ISSPSPAPSL SPLTQGLYTI ESSHMVQSMY 480 QASNLTINQQ ANPNMYEPSS FYSNQHHSPS HAQFLQESLI HSQFQDPVSN GNQLKQVMDD 540 SQHLHPSSFM HYNHRYRAAG V

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MFAFAVGRRA MDVNEGEEVM NHENDVDVRM SNNLDLNVEH DCRSPKSSNV NGVRSRRSLK  60
HEVLKLGTEF DSDEQAYRFY HKYAELVGFS VRKDWVNRSK VHGRVMSRKF TCSRQGHRKK  120
DKRDVNVKKH RKETRTGCLA YMVVTRQTDG KYLVTQFEAE HNHEDVNLTK AERLLESPSG  180
KGNSTEVSET DSLKNSEIQS KLSFQMLAWD SMLERHGLCN NAWLRWMYRE KEKWAVAYGR  240
NTFFIERNGT HLVELLSDKL RSCLGLDIDV LQFFKHFENV VNEQRYRELE STLDMGRHAP  300
VLMANAILLK HPSETYTPKA FEVFQREYEK CLNVIIDKAA ESDPAFEYAS RQLDEVTRGI  360
ERILNFKTFE EAKGPCASDN ELADVGIDRN DFEDQDVDVM KGTTEAGSIV PDKDQLNHCG  420
EQIPGVGGNL NIHPSPPETV LSVACAPPTY ISSPSPAPSL SPLTQGLYTI ESSHMVQSMY  480
QASNLTINQQ ANPNMYEPSS FYSNQHHSPS HAQFLQESLI HSQFQDPVSN GNQLKQVMDD  540
SQHLHPSSFM HYNHRYRAAG V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101183.1	1e-108	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_011101184.1	1e-108	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A4D8YFL6	1e-145	A0A4D8YFL6_SALSN; Zinc finger SWIM domain-containing protein 3
STRING	Migut.F01137.1.p	2e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-18	FAR1 family protein