PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011905-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 472aa    MW: 52047 Da    PI: 6.7239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011905-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.42.9e-1071024592374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             +lL+ecA a+s ++l +a+++L +ls++asp+g ++ +R++ayf++A+++r+++s+ ++++ +++  +       + aa++++++vs
  SMil_00011905-RA_Salv 102 LTLLFECAVAISLDNLGEAHRMLLELSQTASPYGaSSAERVVAYFAKAMSSRVVNSWIGVCAPIHVDFK------AVHAAFHVYNNVS 183
                            579*******************************99*******************99999977766555......46788999***** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P++kf+h+t NqaIlea ++++r+Hi+D+di+qGlQWpaL++ La+R+eg+p +R+Tg+gs    s e l etg++L++fA++lg++f
  SMil_00011905-RA_Salv 184 PFVKFAHFTSNQAILEACSRHSRLHIVDLDIMQGLQWPALFHILATRAEGAPYVRMTGLGS----SMELLLETGKQLSSFARRLGMQF 267
                            *************************************************************....9********************** PP

                   GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            ef++ v+k++ d+ ++++L +++g++laV++    h+l+d +++  +    +++l+++l+P+vv++veqe+ h ++sFl+rf+ +l+y
  SMil_00011905-RA_Salv 268 EFHA-VEKKFGDVaDVSALGIRRGDTLAVHWLQ--HSLYDATGPDWK----TMRLLQGLRPRVVTLVEQEIAH-GGSFLDRFVASLHY 347
                            ****.5776666659*****************9..999999999888....**********************.789*********** PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                            ys++fdsl a l+ e+  r+ vE+ +l+rei nv+a  g +r  +  ++++Wr+ l  +GF ++ +s +a++qa+l+l++++  +gyr
  SMil_00011905-RA_Salv 348 YSTMFDSLGAFLAGEDAGRHRVEQWVLHREINNVLAVGGPARSGED-KFRNWRSELAGSGFVQMGMSGNAMAQAQLILNMFPaARGYR 434
                            *****************************************77665.5**************************************** PP

                   GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374
                            +   ++g+l lgWkd +L+++SaW+
  SMil_00011905-RA_Salv 435 LVqGDHGTLSLGWKDTSLYTASAWT 459
                            8725688888**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.12275437IPR005202Transcription factor GRAS
PfamPF035149.9E-105102459IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MQPQEQLNYS GNLFSEHLIT KTSDRSDQLS QWVEHVTKQL IEDLPETDHD LTPTYDDGGA  60
TVAALLGELS PIRKAARKSS DDSPGSTLPT KVPADEVAMS LLTLLFECAV AISLDNLGEA  120
HRMLLELSQT ASPYGASSAE RVVAYFAKAM SSRVVNSWIG VCAPIHVDFK AVHAAFHVYN  180
NVSPFVKFAH FTSNQAILEA CSRHSRLHIV DLDIMQGLQW PALFHILATR AEGAPYVRMT  240
GLGSSMELLL ETGKQLSSFA RRLGMQFEFH AVEKKFGDVA DVSALGIRRG DTLAVHWLQH  300
SLYDATGPDW KTMRLLQGLR PRVVTLVEQE IAHGGSFLDR FVASLHYYST MFDSLGAFLA  360
GEDAGRHRVE QWVLHREINN VLAVGGPARS GEDKFRNWRS ELAGSGFVQM GMSGNAMAQA  420
QLILNMFPAA RGYRLVQGDH GTLSLGWKDT SLYTASAWTS PNHHLHHMHA SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1379545913379Protein SCARECROW
5b3h_A1e-1379545912378Protein SCARECROW
5b3h_D1e-1379545912378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080303.10.0protein SCARECROW-like
SwissprotQ9AVK41e-137SCR_PEA; Protein SCARECROW
TrEMBLA0A2G9GCB50.0A0A2G9GCB5_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000875040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122912023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-137GRAS family protein