PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011905-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 52047 Da PI: 6.7239 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.4 | 2.9e-107 | 102 | 459 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lL+ecA a+s ++l +a+++L +ls++asp+g ++ +R++ayf++A+++r+++s+ ++++ +++ + + aa++++++vs SMil_00011905-RA_Salv 102 LTLLFECAVAISLDNLGEAHRMLLELSQTASPYGaSSAERVVAYFAKAMSSRVVNSWIGVCAPIHVDFK------AVHAAFHVYNNVS 183 579*******************************99*******************99999977766555......46788999***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P++kf+h+t NqaIlea ++++r+Hi+D+di+qGlQWpaL++ La+R+eg+p +R+Tg+gs s e l etg++L++fA++lg++f SMil_00011905-RA_Salv 184 PFVKFAHFTSNQAILEACSRHSRLHIVDLDIMQGLQWPALFHILATRAEGAPYVRMTGLGS----SMELLLETGKQLSSFARRLGMQF 267 *************************************************************....9********************** PP GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 ef++ v+k++ d+ ++++L +++g++laV++ h+l+d +++ + +++l+++l+P+vv++veqe+ h ++sFl+rf+ +l+y SMil_00011905-RA_Salv 268 EFHA-VEKKFGDVaDVSALGIRRGDTLAVHWLQ--HSLYDATGPDWK----TMRLLQGLRPRVVTLVEQEIAH-GGSFLDRFVASLHY 347 ****.5776666659*****************9..999999999888....**********************.789*********** PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 ys++fdsl a l+ e+ r+ vE+ +l+rei nv+a g +r + ++++Wr+ l +GF ++ +s +a++qa+l+l++++ +gyr SMil_00011905-RA_Salv 348 YSTMFDSLGAFLAGEDAGRHRVEQWVLHREINNVLAVGGPARSGED-KFRNWRSELAGSGFVQMGMSGNAMAQAQLILNMFPaARGYR 434 *****************************************77665.5**************************************** PP GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374 + ++g+l lgWkd +L+++SaW+ SMil_00011905-RA_Salv 435 LVqGDHGTLSLGWKDTSLYTASAWT 459 8725688888**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.122 | 75 | 437 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-105 | 102 | 459 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MQPQEQLNYS GNLFSEHLIT KTSDRSDQLS QWVEHVTKQL IEDLPETDHD LTPTYDDGGA 60 TVAALLGELS PIRKAARKSS DDSPGSTLPT KVPADEVAMS LLTLLFECAV AISLDNLGEA 120 HRMLLELSQT ASPYGASSAE RVVAYFAKAM SSRVVNSWIG VCAPIHVDFK AVHAAFHVYN 180 NVSPFVKFAH FTSNQAILEA CSRHSRLHIV DLDIMQGLQW PALFHILATR AEGAPYVRMT 240 GLGSSMELLL ETGKQLSSFA RRLGMQFEFH AVEKKFGDVA DVSALGIRRG DTLAVHWLQH 300 SLYDATGPDW KTMRLLQGLR PRVVTLVEQE IAHGGSFLDR FVASLHYYST MFDSLGAFLA 360 GEDAGRHRVE QWVLHREINN VLAVGGPARS GEDKFRNWRS ELAGSGFVQM GMSGNAMAQA 420 QLILNMFPAA RGYRLVQGDH GTLSLGWKDT SLYTASAWTS PNHHLHHMHA SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-137 | 95 | 459 | 13 | 379 | Protein SCARECROW |
5b3h_A | 1e-137 | 95 | 459 | 12 | 378 | Protein SCARECROW |
5b3h_D | 1e-137 | 95 | 459 | 12 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080303.1 | 0.0 | protein SCARECROW-like | ||||
Swissprot | Q9AVK4 | 1e-137 | SCR_PEA; Protein SCARECROW | ||||
TrEMBL | A0A2G9GCB5 | 0.0 | A0A2G9GCB5_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087504 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12291 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-137 | GRAS family protein |