PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011876-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 355aa    MW: 39182.8 Da    PI: 4.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011876-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1998148155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr++  +g+WvAeIr+p     +   r +lg+fgta eAa a+++a+k+++g
  SMil_00011876-RA_Salv  98 CNYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFGTAVEAALAYDEAAKAMYG 148
                            56*****999.**********6.....337************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-3098156No hitNo description
PfamPF008472.5E-1498148IPR001471AP2/ERF domain
SMARTSM003805.1E-3499162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2999156IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2199156IPR016177DNA-binding domain
PROSITE profilePS5103221.1899156IPR001471AP2/ERF domain
PRINTSPR003671.2E-9100111IPR001471AP2/ERF domain
PRINTSPR003671.2E-9122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRFGGFLEMT GLLLLNRDMA LLNNDVNMAS LPMDYNRKRK SRSRKSGTKS VTEVLEKWKE  60
YNTKLDTVDD DKAPRKAPAK GSKKGCMKGK GGPDNSRCNY RGVRQRTWGK WVAEIREPHR  120
GSRLWLGTFG TAVEAALAYD EAAKAMYGLC ARLNFPGYSS SASVTVSSSE STNSSISEVC  180
CKRDMQKLDV PNAKTEGSRL QSDGRLLDAS TPMSAIKEEV MEDAPRREEA HGEEPSKEEV  240
KQESEGSFGS DDAERPSVVD RPPYDDQFEK FPLDEMFDVD ELLAALDAAP YNPSRAQAGA  300
GHCANGSQTE GPLVNREQVV LGSDYDLDFL KPGRQEDCDV LLSDLLLDLD SDLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1699156563ATERF1
3gcc_A2e-1699156563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858842.11e-106PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A4D8ZYT91e-126A0A4D8ZYT9_SALSN; EREBP-like factor
STRINGMigut.F00629.1.p1e-105(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.26e-30DRE-binding protein 2A