PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011776-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 29784.5 Da PI: 8.8264

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011776-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.8e-31	29	78	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+ SMil_00011776-RA_Salv 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 78 79***********************************************8 PP
2	K-box	91.9	1.1e-30	116	203	13	100
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + +qqe++kL+++i+ q+++R++lGe+++s++lk+L+++e+++ek++++iR+kKnell+++ie +qk+e el++en++Lr+k+ e SMil_00011776-RA_Salv 116 DDQFYQQEATKLRRQIRDCQNTNRQILGEGVSSMQLKDLRNMENKVEKAISRIRTKKNELLFAEIELMQKRELELHNENMYLRAKIGE 203 5699*********************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.0E-40	21	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.955	21	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.45E-44	22	98	No hit	No description
SuperFamily	SSF55455	9.16E-33	22	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-33	23	43	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	23	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-26	30	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-33	43	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.6E-33	58	79	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.3E-25	116	201	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.525	117	207	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090376	Biological Process	seed trichome differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
LAGSMEFPNQ ESESSNSLRK NGRGKIQIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD 60 AEVALVVFSS RGRLYEYANN SVRATIDRYK KATVDSSNTM STSEANTQAI YSQFVDDQFY 120 QQEATKLRRQ IRDCQNTNRQ ILGEGVSSMQ LKDLRNMENK VEKAISRIRT KKNELLFAEI 180 ELMQKRELEL HNENMYLRAK IGESERAQQQ MNMMNQEYEQ NSHNYDVRNF LPVNLLQPEH 240 DHHYSCQDQT PLQLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-20	22	89	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-20	22	89	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-20	22	89	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-20	22	89	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3kov_B	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3kov_I	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3kov_J	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_A	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_B	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_C	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_D	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_I	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
3p57_J	3e-20	22	89	1	68	Myocyte-specific enhancer factor 2A
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098072.1	1e-138	floral homeotic protein AGAMOUS
Swissprot	Q93XH4	1e-114	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A4D8XQR3	1e-164	A0A4D8XQR3_SALSN; MADS-box transcription factor, plant
STRING	XP_009762632.1	1e-119	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-102	MIKC_MADS family protein

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]