PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011716-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ARF | ||||||||
Protein Properties | Length: 345aa MW: 37784.4 Da PI: 9.5135 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 83.1 | 2.7e-26 | 115 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f k+lt+sd+++ g +++p+ +a+ + ++ + l+l+d++g We+++iyr++++r++lt+GW++Fv+a++L +gD vv SMil_00011716-RA_Salv 115 FAKILTRSDANNGGGFSVPRFCADMIlpqlnfaADPPVQ--NLVLRDTHGHAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLVAGDAVV 200 89*****************9999888*****97666666..6********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F+ ++rs++el+v+++r+ SMil_00011716-RA_Salv 201 FM-KKRSTGELFVGIRRA 217 **.556**********97 PP | |||||||
2 | Auxin_resp | 75.1 | 2e-25 | 235 | 316 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +++a +++Fe vY+P+a++ +Fvv +ekv+++l++++s+Gm+++ma+et+d+s+ ++ +G++++ s+ W +S+Wr+L+ SMil_00011716-RA_Salv 235 IESAVRGMPFEAVYYPKAGSFDFVVMAEKVKDSLRMRWSAGMKVRMAVETDDASRLTWiQGIITAAST-PAGIWCGSPWRMLQ 316 66788899**************************************************9******999.6669********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-28 | 110 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-33 | 112 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-24 | 114 | 216 | No hit | No description |
SMART | SM01019 | 9.2E-19 | 115 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.86 | 115 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-24 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-22 | 235 | 316 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MPSSSSSTAA AEVDAKIWRA VAGAAVRVPS VNSYVYYFPQ GHLEQCSAAA AVTNRNFTLM 60 RPWFPCQILS VRFLSDPASD QVYAKILLQP LQPLGPRPSN AAGGGAGDDD DVVSFAKILT 120 RSDANNGGGF SVPRFCADMI LPQLNFAADP PVQNLVLRDT HGHAWEFRHI YRGTPRRHLL 180 TTGWSKFVNA KRLVAGDAVV FMKKRSTGEL FVGIRRAERI GGDAAAEEAE AVAAIESAVR 240 GMPFEAVYYP KAGSFDFVVM AEKVKDSLRM RWSAGMKVRM AVETDDASRL TWIQGIITAA 300 STPAGIWCGS PWRMLQVNPH VRPTYNLNFV YVFVKLAIIN ALIEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-63 | 6 | 318 | 44 | 369 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX036732 | 0.0 | KX036732.1 Salvia miltiorrhiza auxin response factor ARF12 (ARF) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074899.1 | 1e-157 | auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 1e-106 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A191T8T1 | 0.0 | A0A191T8T1_SALMI; Auxin response factor | ||||
STRING | Migut.N03328.1.p | 1e-141 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 3e-73 | auxin response factor 16 |