PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011704-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 416aa MW: 46178.3 Da PI: 7.5463

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011704-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.7e-10	252	299	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq SMil_00011704-RA_Salv 252 AHSLAERVRREKISERMKALQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 299 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.07E-11	246	303	No hit	No description
SuperFamily	SSF47459	8.11E-18	246	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-18	248	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.082	248	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	252	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	254	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEKEGSSNIF FRPNWENSVD QNDPFESALS SMIRQHLQFR RDFPFNGNNN NNNSSANTSC 60 YSTPLNSPPK LNLSSIMRDR ANHFLSLPTL APFSADPAFA ERAARFSCFA NKNFNELDPT 120 KIPPPPTVQE NWESIQAPEK NFMASRSSTP DNAADSRENS TVSEQIPPPE NGGNPRKRKS 180 APKGKGKDTT TTAPAPNLAN VSASENSESS AKRSKSEEDK ANQKPSKDNS KLPEPPKDYI 240 HVRARRGQAT DAHSLAERVR REKISERMKA LQDLVPGCNK VTGKAVMLDE IINYVQSLQR 300 QVEFLSMKLA TVNPRMDFNM EALMSKDMFQ SRGSLPHSVY SSDGYPFQSQ SIPCGNEAPF 360 ASSNAAARNQ MENFGDAASQ VSSFWEDDLH SIVQMGFGQM QNFQGILPTA QMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEKEGSSNIF FRPNWENSVD QNDPFESALS SMIRQHLQFR RDFPFNGNNN NNNSSANTSC  60
YSTPLNSPPK LNLSSIMRDR ANHFLSLPTL APFSADPAFA ERAARFSCFA NKNFNELDPT  120
KIPPPPTVQE NWESIQAPEK NFMASRSSTP DNAADSRENS TVSEQIPPPE NGGNPRKRKS  180
APKGKGKDTT TTAPAPNLAN VSASENSESS AKRSKSEEDK ANQKPSKDNS KLPEPPKDYI  240
HVRARRGQAT DAHSLAERVR REKISERMKA LQDLVPGCNK VTGKAVMLDE IINYVQSLQR  300
QVEFLSMKLA TVNPRMDFNM EALMSKDMFQ SRGSLPHSVY SSDGYPFQSQ SIPCGNEAPF  360
ASSNAAARNQ MENFGDAASQ VSSFWEDDLH SIVQMGFGQM QNFQGILPTA QMKVEL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257441	0.0	KP257441.1 Salvia miltiorrhiza clone 8 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084194.2	1e-170	transcription factor bHLH78
TrEMBL	A0A0H3Y7G3	0.0	A0A0H3Y7G3_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_009788675.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-70	bHLH family protein