PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011694-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 19774.7 Da PI: 10.5114 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +++Wv+e+r+p r kr++lg++ t+e+Aa+a++ a+++l+g SMil_00011694-RA_Salv 29 PVYRGVRLRN-SNKWVCELREP-----RhqKRVWLGTYPTPEMAARAHDLAALALRG 79 68*****999.7*********8.....447*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-14 | 29 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-25 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 30 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.022 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 30 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 31 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-25 | 31 | 89 | No hit | No description |
PRINTS | PR00367 | 3.0E-7 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MPNSEFHETT TSHSKRRDGR KKFKVTRHPV YRGVRLRNSN KWVCELREPR HQKRVWLGTY 60 PTPEMAARAH DLAALALRGS AACLNFADSA WRLPLPSSKD AKDLRKAAAA AAEAFRPRPR 120 EEACLKRRID IFEVSGVVGL AEAVLMSPPP LLGWRFSWDE VESVAEVDLA LWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 28 | 86 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835461.1 | 7e-72 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 1e-51 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A4D8Y892 | 2e-83 | A0A4D8Y892_SALSN; EREBP-like factor | ||||
STRING | Migut.A00920.1.p | 3e-71 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 1e-37 | ERF family protein |