PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011689-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 361aa    MW: 40040.4 Da    PI: 8.8767
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011689-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-1369113147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +W+++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  SMil_00011689-RA_Salv  69 RESWSEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 113
                            789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.4E-1663119IPR009057Homeodomain-like
PROSITE profilePS5129414.54464118IPR017930Myb domain
TIGRFAMsTIGR015578.8E-1867116IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-667119IPR009057Homeodomain-like
SMARTSM007171.6E-1068116IPR001005SANT/Myb domain
PfamPF002499.0E-1169113IPR001005SANT/Myb domain
CDDcd001675.56E-871114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVSVYRSPPP DQEFSHFHGF YVGGDPLKMP EADGGDGNML PMATDANTAS GVDDPNKKIR  60
KPYTITKSRE SWSEQEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA QKYFLKVQKN  120
GTSEHVPPPR PKRKAAHPYP QKAAKNAVPR TGGPVQSSVA KVEAGYAVRR DPFSIPRNPI  180
DGSPLSSWSY NVVPAGCLSN VAKDDVGLAS VAHNYSSSSN DSTPCGWKSN EMDHEVKAGQ  240
CNTARDLVMQ HEVRARRMQQ NTSSVPHCLL FASVVSEINI TVMPDFAQVY GFIGSVFDPT  300
ATDHLKKLRK MEPINVETVL MLMKNLCVNL VTPEFEDHRK LLSSYKVATE NVRAGSEIRS  360
A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0086581e-79KF008658.1 Scutellaria baicalensis MYB9 (myb) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093084.11e-146protein REVEILLE 6 isoform X1
SwissprotQ8H0W34e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A4D9BC041e-176A0A4D9BC04_SALSN; Uncharacterized protein
STRINGcassava4.1_011317m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-78MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]