PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011633-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Nin-like | ||||||||
Protein Properties | Length: 232aa MW: 26215.7 Da PI: 5.4442 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 57.5 | 2.7e-18 | 77 | 121 | 4 | 48 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++ e+l+ +F +p+kd+ k+Lgv+ +++Kr+CR+yGI RWP Rk SMil_00011633-RA_Salv 77 SLTYEVLEPHFGKPLKDVVKDLGVGRSTIKRACREYGIGRWPNRK 121 6899****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.584 | 58 | 145 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.0E-16 | 77 | 121 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.45E-15 | 152 | 226 | No hit | No description |
SMART | SM00666 | 8.8E-8 | 159 | 229 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 16.624 | 159 | 232 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.3E-16 | 159 | 227 | No hit | No description |
Pfam | PF00564 | 1.8E-12 | 160 | 228 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
LACGKQLGEE LVVEVIEFSD SSKLDSPESE QAHVFPIKFK SVQYEHQHTQ EQSTQECSVA 60 ALDSKSREKG KRKSGISLTY EVLEPHFGKP LKDVVKDLGV GRSTIKRACR EYGIGRWPNR 120 KEHEKNLPLF QEQSGGDSQQ DTSNESTHPV IVVEEEKEKV MIKVKYKEDT IKFELCLSLG 180 VSKLFEEVAT RLKLMVDTFK LKYVDEDNDE ILLACDADLH LCPKTLTATG QT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D8Z0G4 | 4e-74 | A0A4D8Z0G4_SALSN; Uncharacterized protein | ||||
STRING | Migut.E00886.1.p | 8e-50 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4897 | 4 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 3e-11 | NIN like protein 7 |