PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011613-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 25475.6 Da PI: 8.1503 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.1 | 2.1e-11 | 67 | 152 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 kfY +YA +GF+ k skrn it+r + s+eg+++ +++k ++r + tr++Cka+ ++++++ g ++ t++++ Hn SMil_00011613-RA_Salv 67 KFYFTYAVCCGFQGWLGLIKWSKRNV-ITHRFLLWSREGHKQYTDNK---NKRFMMITRVDCKARAVLRLMDaGGGYVFTDFVEPHNY 150 6****************999997777.9**************99877...9999******************99*************8 PP FAR1 88 el 89 ++ SMil_00011613-RA_Salv 151 SF 152 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-8 | 67 | 152 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
LASQLFSVIL IDCLRYINAI DQVTEILSPD QFSKNNIIPE VDYIPHCEDD MKPRVEMIFP 60 KLIDGEKFYF TYAVCCGFQG WLGLIKWSKR NVITHRFLLW SREGHKQYTD NKNKRFMMIT 120 RVDCKARAVL RLMDAGGGYV FTDFVEPHNY SFISDNHRHF MCYNRNLNDG HMKFVLNCLR 180 ANIGSVKSFR LFKELVGEYD KVGCTIFDFK CHTPILE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-09 | FAR1-related sequence 5 |