PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00011531-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 20811.9 Da PI: 8.8867 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 79.9 | 4.1e-25 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C++lr++C++ C+l + ++q +++ +v+k+FG++ ++++++a+p ++ +++++sl++eA r+ +Pv+Ga+g+++++ SMil_00011531-RA_Salv 2 SCNGCRILRKGCSDTCILNTSLqfihsGEAQGHATLFVAKFFGRAALMSFISAVPLNQTSAVFQSLLFEAAGRTVNPVSGAAGLLWTG 89 6******************9998887767889******************************************************** PP DUF260 84 qqqleqlkaelal 96 +++++q+++ ++l SMil_00011531-RA_Salv 90 NWHVCQAAVATVL 102 ******9987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.341 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-22 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MSCNGCRILR KGCSDTCILN TSLQFIHSGE AQGHATLFVA KFFGRAALMS FISAVPLNQT 60 SAVFQSLLFE AAGRTVNPVS GAAGLLWTGN WHVCQAAVAT VLRGGTLSPI PSGPDFDAAD 120 IFKAEGPPRR KASIPKRQEA DLDLSLRAGF PAKKNQPFPE RPRPLGSPSM NSQESEMTTC 180 GGQPPPEIKI LNLFN |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099355.1 | 1e-83 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 5e-59 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2G9HIR7 | 5e-84 | A0A2G9HIR7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00361.1.p | 2e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-61 | LOB domain-containing protein 38 |