PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011524-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 386aa    MW: 43365.4 Da    PI: 5.1942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011524-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10209250854
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             E+rRR +++ ++e Lr l+P +      K++ a+i+  A++YIk+L
  SMil_00011524-RA_Salv 209 SEKRRRVELKGKYESLRLLVPDP-----SKNDRASIVADAIRYIKEL 250
                            6*********************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.525201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-10206261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.64E-11208269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-8209254No hitNo description
PfamPF000102.0E-7209250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYEENNGFDE SSSMHGGGFS EAEDAFSQTH CNNFTTQEQP YPQNDVAALE MELQIEQCFT  60
NNNKIHEMVH QASHWQDITT GHYQNSAADF NQVFAAKASF THPPDLPTIF PPPSSLLPNF  120
PQKSPAFSAS SSSIVYDPLL ALNQPPSFRD LFYSSPNGGG VYTLGVGVDE REANVGFYEN  180
GEGVFEFTAA EMVEIENGDG IKDTKQHSSE KRRRVELKGK YESLRLLVPD PSKNDRASIV  240
ADAIRYIKEL KRTVGELKGL VERKRCARER FKRPKVEEDD VDPSLRSSWL HRKSKNTEVD  300
VRIVDDEITV KLVQQKRINC LLFVSKVHDE LQLDLQHVAG GLIGDYYSYL FNSKICEGSI  360
VYASAVANKL IEVADKHYAA LPPTTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574510.0KP257451.1 Salvia miltiorrhiza clone 18 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093423.11e-137transcription factor bHLH91-like
TrEMBLA0A0H3Y7G80.0A0A0H3Y7G8_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N01685.1.p1e-108(Erythranthe guttata)
STRINGMigut.N01686.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-79bHLH family protein