PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011497-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GATA | ||||||||
Protein Properties | Length: 215aa MW: 23373.9 Da PI: 10.2236 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 143 | 176 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + SMil_00011497-RA_Salv 143 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 176 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.2E-69 | 2 | 214 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.477 | 137 | 173 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-15 | 137 | 187 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.7E-15 | 141 | 174 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 3.47E-15 | 141 | 200 | No hit | No description |
CDD | cd00202 | 4.28E-13 | 142 | 189 | No hit | No description |
Pfam | PF00320 | 2.2E-15 | 143 | 176 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 143 | 168 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
LQGCDTLFSG SPASDLAAEL SVPYEDIVQL EWLSTFVEDS FSGGGLTVGK EKKEQLSPVS 60 VVESSTSSSS SSAVPLSPRH RGPQRARSKR PRPPMFNPRP AIQLISPASS ESNSFAESSP 120 LKKSKKIKIT LPATPTPQPL RKCLHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE 180 YRPAASPTFV PSLHSNSHKK VIEMRCKVEP MITSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 92 | KRPRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076972.1 | 1e-94 | GATA transcription factor 8-like | ||||
Refseq | XP_011076974.1 | 1e-94 | GATA transcription factor 8-like | ||||
TrEMBL | A0A4D8ZQU9 | 1e-105 | A0A4D8ZQU9_SALSN; Uncharacterized protein | ||||
STRING | XP_009598426.1 | 1e-87 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 5e-42 | GATA family protein |