PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011496-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 264aa    MW: 29339.5 Da    PI: 9.2792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011496-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+t Ed ll+++++q G g+W++ +++ g+ R++k+c++rw +yl
  SMil_00011496-RA_Salv 14 RGPWSTKEDSLLANYIQQNGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                           89******************************99************97 PP
2Myb_DNA-binding506.9e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  SMil_00011496-RA_Salv  67 RGNISEDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                            7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.05961IPR017930Myb domain
SuperFamilySSF466891.25E-2711108IPR009057Homeodomain-like
SMARTSM007175.8E-111363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-211568IPR009057Homeodomain-like
CDDcd001678.83E-91661No hitNo description
PROSITE profilePS5129424.58462116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2469116IPR009057Homeodomain-like
CDDcd001671.81E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRSPCCSKV GLRRGPWSTK EDSLLANYIQ QNGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SEDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKTAA  120
APHKDLPNLA AKPKKKKPKQ KPTPPSPLKD ESAADEPTPP PKTKVYLPKP IRVSSAFSRS  180
NSYDSLASNS DGEKAAEELS YVPLQWPPIF ELEEGDYGVC AAVGGGSDDF LDGGFILPVL  240
NHSDSISSDV NMLEKVYDEY LQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121185110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141KKKPKQKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.11e-139transcription repressor MYB5-like
SwissprotQ388503e-63MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A286M5H50.0A0A286M5H5_SALMI; Transcription factor
STRINGMigut.O00736.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-65myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]