PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011430-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 275aa    MW: 30235.2 Da    PI: 9.2293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011430-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-1395139347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+++++ + ++lG g+W+ I+r     Rt  q+ s+ qky
  SMil_00011430-RA_Salv  95 PWTEEEHKQFLVGLQKLGRGNWRGISRNYVPSRTSTQVASHAQKY 139
                            7**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.96888144IPR017930Myb domain
SuperFamilySSF466891.12E-1690145IPR009057Homeodomain-like
SMARTSM007171.4E-892142IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-1693143IPR006447Myb domain, plants
PfamPF002495.2E-1195139IPR001005SANT/Myb domain
CDDcd001673.38E-1095140No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1195138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRRCCSHCNT INGDATPTCP TTGGGRGLKL FGVRLTDGSF IKKSASMGNL SRYSAAADTM  60
EGYHSDHLNH TFAARRPPLR NKVKHSHAWG RAGIPWTEEE HKQFLVGLQK LGRGNWRGIS  120
RNYVPSRTST QVASHAQKYF IRQSNATGKK KRPSLFDLAP DTEINSSVPK QSTTIQSPAV  180
IDDDEDLMLT SSQGADINNS LPCLDLSLEP AFTPFLFQLW PPNAYSLKDG AAEVSQHHLV  240
RPVQVISKET MKELVGMSQL TLGETSTVLI DSSQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072427.11e-102transcription factor MYBS3
TrEMBLA0A2G9I8G11e-106A0A2G9I8G1_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_2092.11e-67(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-44MYB_related family protein