PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011418-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GATA

Protein Properties

Length: 391aa MW: 43939.2 Da PI: 6.2941

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011418-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.4	7e-12	6	33	8	35
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ SMil_00011418-RA_Salv 6 GTPLWRNGPPEKPVLCNACGSRWRTKGT 33 5******88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	0.0042	3	47	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.66E-6	5	37	No hit	No description
Pfam	PF00320	1.0E-9	6	33	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.1E-8	6	33	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.39E-11	7	46	No hit	No description
Pfam	PF13919	1.9E-10	280	371	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MLNHHGTPLW RNGPPEKPVL CNACGSRWRT KGTLANYTPL HARAEPDELE DLRFSRVKTI 60 SIKNKEPKVL KRKLNSEVAE FGDGPPENYQ GLHKVYDEDT SNRSSSGSAI SNSEKYAQYG 120 IADTSDLTSP AQPSAWDSIV PSRKRTCVAR PKPSPVEVLT KDLYTLWYEQ QSSCLSGSSE 180 EDLLLESDKP MVSVEIGHGS VLIRHPSSVF REEESEASSL SVDNKQYTLT SRDMSFHGPI 240 EDTGAYSSSK VNEKLKKNTY PGVVQEQTRR DKDQVVKLPI LAHHNSPLCY IDLRDIVNFE 300 LFSSHLTNDE QQQLMNLLPS VDTSDAPYRC CDNFFHLSQT LIRKSLKSMF DSTEFNLNLS 360 SFQKLIADGV FDNSFGGVNT EDCRILKKLV L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MLNHHGTPLW RNGPPEKPVL CNACGSRWRT KGTLANYTPL HARAEPDELE DLRFSRVKTI  60
SIKNKEPKVL KRKLNSEVAE FGDGPPENYQ GLHKVYDEDT SNRSSSGSAI SNSEKYAQYG  120
IADTSDLTSP AQPSAWDSIV PSRKRTCVAR PKPSPVEVLT KDLYTLWYEQ QSSCLSGSSE  180
EDLLLESDKP MVSVEIGHGS VLIRHPSSVF REEESEASSL SVDNKQYTLT SRDMSFHGPI  240
EDTGAYSSSK VNEKLKKNTY PGVVQEQTRR DKDQVVKLPI LAHHNSPLCY IDLRDIVNFE  300
LFSSHLTNDE QQQLMNLLPS VDTSDAPYRC CDNFFHLSQT LIRKSLKSMF DSTEFNLNLS  360
SFQKLIADGV FDNSFGGVNT EDCRILKKLV L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070264.1	1e-162	GATA transcription factor 26
Swissprot	Q8W4H1	1e-107	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A4D9BM10	0.0	A0A4D9BM10_SALSN; Uncharacterized protein
STRING	XP_009772103.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2089	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	5e-96	GATA transcription factor 26