PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011398-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14229.5 Da PI: 8.3208 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.3e-38 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C++dC++apyfp+++p++fa+vhk++Gasnv k+l++lp + r +a+++l+yeA +r++dPvyG++g+++ l+qql+ SMil_00011398-RA_Salv 10 RCAACKHLRRRCPSDCIFAPYFPSNNPRRFAYVHKIYGASNVGKILEDLPVNCRAQAADTLCYEAYCRIKDPVYGCAGMVSVLHQQLN 97 6*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++ +la++k+e SMil_00011398-RA_Salv 98 VAECQLATVKAE 109 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.48 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-38 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
LILDGMNWSR CAACKHLRRR CPSDCIFAPY FPSNNPRRFA YVHKIYGASN VGKILEDLPV 60 NCRAQAADTL CYEAYCRIKD PVYGCAGMVS VLHQQLNVAE CQLATVKAEV TAIRNDSATL 120 TLPTWFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-33 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-33 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098999.1 | 2e-60 | LOB domain-containing protein 23-like | ||||
Swissprot | P59468 | 2e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A4D8YKS0 | 1e-62 | A0A4D8YKS0_SALSN; Uncharacterized protein | ||||
STRING | Migut.K00626.1.p | 3e-54 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-46 | LOB domain-containing protein 24 |