PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011278-RA_Salv
Common NameMYB40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 310aa    MW: 34436.9 Da    PI: 7.4782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011278-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-182875148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++lvd++ ++G g+W++ ++  g+ R++k+c++rw +yl
  SMil_00011278-RA_Salv 28 KGPWTPEEDDKLVDYIDKHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 75
                           79******************************99************97 PP

2Myb_DNA-binding45.81.4e-1481126148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
  SMil_00011278-RA_Salv  81 RGPFTGDEEKLVIQLHAVLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 126
                            89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-251978IPR009057Homeodomain-like
PROSITE profilePS5129425.2072379IPR017930Myb domain
SuperFamilySSF466891.49E-3025122IPR009057Homeodomain-like
SMARTSM007173.9E-142777IPR001005SANT/Myb domain
PfamPF002497.1E-172875IPR001005SANT/Myb domain
CDDcd001671.58E-113075No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2579130IPR009057Homeodomain-like
PROSITE profilePS5129419.13280130IPR017930Myb domain
SMARTSM007177.3E-1480128IPR001005SANT/Myb domain
PfamPF002491.3E-1381126IPR001005SANT/Myb domain
CDDcd001671.69E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
LWSVVLKVFV CVCVMGRAPC CEKKGLKKGP WTPEEDDKLV DYIDKHGHGS WRSLPKLAGL  60
LRCGKSCRLR WTNYLRPDIK RGPFTGDEEK LVIQLHAVLG NRWAAIASQL PGRTDNEIKN  120
LWNTHLKKRL LLMGIDPGTH EPSSSGALVS RPPSAPSTRH MAQWEGARLE AEARLSRESL  180
LCFPPAAPGS EEGGGDHFLR LWNSEVGETF RRMNIKSQPR SPSSSASTRC RSFSGTTTEV  240
ELKVADALAK STSSNETEDS SESTLQLLLD LPNNNDMSFL GDPDCYTLYP DFSTDSLFHS  300
SPQEHRDGFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29261305108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593940.0KF059394.1 Salvia miltiorrhiza MYB-related transcription factor (MYB40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.11e-141myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A059PRS40.0A0A059PRS4_SALMI; MYB-related transcription factor
STRINGVIT_15s0046g03190.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]