PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011246-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRF

Protein Properties

Length: 416aa MW: 44655.5 Da PI: 7.9076

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011246-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	116	160	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ SMil_00011246-RA_Salv 116 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 160 79****************************************986 PP
2	QLQ	66.7	5.4e-23	55	90	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+ Q+q+L++Q+++yKyL+a++PvPp+L+++i++ SMil_00011246-RA_Salv 55 PFTPVQWQELEHQAMIYKYLMAGLPVPPDLVMPIRR 90 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.4E-13	54	90	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	25.356	55	90	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-17	55	89	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.831	116	160	IPR014977	WRC domain
Pfam	PF08879	8.2E-21	117	159	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
LELTRSGVKG RGETIEEKSG SEGGGTMSGA ASSSVAVGVG IGGGGELGYG GYRAPFTPVQ 60 WQELEHQAMI YKYLMAGLPV PPDLVMPIRR SFDAISARFF HHPSLGYCSY YGKKFDPEPG 120 RCRRTDGKKW RCSKDAHPDS KYCERHMHRG RNRSRKPVES QSTSQSVSTA TSHISSGCGN 180 NSGSFHGSGS GSGSFQNMPF YSVASSDGSS FGSNVTKLQM EPISYGIDNK DFRQYIHGVT 240 PDAEDPSFSL EASASVGSLG LGSSAGGGTW RLMPSQVSSS SIIKQKSDSQ LLDPSSTQQN 300 IPHTFEPILK QRQHCFLGSE IGSPVLAKQE QQHPIHPFFS EWPTTKESWS TLDDDDGSSK 360 NLFSSTQLSI SIPRASTSFS SSGYSTQVEG EKLMVGEIAI GDLGLLRGKG SIFKSG

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

LELTRSGVKG RGETIEEKSG SEGGGTMSGA ASSSVAVGVG IGGGGELGYG GYRAPFTPVQ  60
WQELEHQAMI YKYLMAGLPV PPDLVMPIRR SFDAISARFF HHPSLGYCSY YGKKFDPEPG  120
RCRRTDGKKW RCSKDAHPDS KYCERHMHRG RNRSRKPVES QSTSQSVSTA TSHISSGCGN  180
NSGSFHGSGS GSGSFQNMPF YSVASSDGSS FGSNVTKLQM EPISYGIDNK DFRQYIHGVT  240
PDAEDPSFSL EASASVGSLG LGSSAGGGTW RLMPSQVSSS SIIKQKSDSQ LLDPSSTQQN  300
IPHTFEPILK QRQHCFLGSE IGSPVLAKQE QQHPIHPFFS EWPTTKESWS TLDDDDGSSK  360
NLFSSTQLSI SIPRASTSFS SSGYSTQVEG EKLMVGEIAI GDLGLLRGKG SIFKSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092605.1	0.0	growth-regulating factor 4-like isoform X2
TrEMBL	A0A4D9ANH7	1e-178	A0A4D9ANH7_SALSN; Uncharacterized protein
STRING	Solyc08g075950.1.1	1e-159	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-47	growth-regulating factor 5