PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011213-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 328aa    MW: 37037.6 Da    PI: 8.6821
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011213-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-1658107148
                            TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd +l+++++++G+   +W + +++ g++R++k+c++rw++yl
  SMil_00011213-RA_Salv  58 KGPWSPEEDAKLKEYIEKHGTTvgNWIALPQRAGLKRCGKSCRLRWLNYL 107
                            79**********************************************97 PP
2Myb_DNA-binding39.31.5e-12114156246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g ++ +Ed ++  ++++ G++ W+ Ia  ++ gRt++++k++w++
  SMil_00011213-RA_Salv 114 GEFSDDEDRIICSLFHRIGSR-WSIIAGQLP-GRTDNDIKNYWNT 156
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.43153111IPR017930Myb domain
SuperFamilySSF466894.59E-2755154IPR009057Homeodomain-like
SMARTSM007179.6E-1357109IPR001005SANT/Myb domain
PfamPF002494.2E-1658107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2459114IPR009057Homeodomain-like
CDDcd001675.75E-1060107No hitNo description
SMARTSM007172.9E-11112160IPR001005SANT/Myb domain
PROSITE profilePS5129416.37112162IPR017930Myb domain
PfamPF002493.4E-11114156IPR001005SANT/Myb domain
CDDcd001675.86E-8115158No hitNo description
Gene3DG3DSA:1.10.10.602.7E-22115162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
LTCVYLKKYK YIDITLFQRA SLIKKQNKTS LSSQDFSFRE REREMGRAPC CDKANVKKGP  60
WSPEEDAKLK EYIEKHGTTV GNWIALPQRA GLKRCGKSCR LRWLNYLRPN IKHGEFSDDE  120
DRIICSLFHR IGSRWSIIAG QLPGRTDNDI KNYWNTKLKK KLLGNNIISP PSPFLPNLNS  180
QIPSPYDHQY VNTNSFRAFS TTAAGIDPPS LISSGFMHGN YNNQVIFGGG GEASCSSSDG  240
SCSANNQIGE NLGFHHQSYL GNHDETQKFF ITEANGYDHS KGGIFSHGNP LDYSMEDIKQ  300
LISTNHISTN LNFFVDEIKT EPGTTLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-25581624105C-Myb DNA-Binding Domain
1msf_C4e-25581624105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594370.0KF059437.1 Salvia miltiorrhiza MYB-related transcription factor (MYB83) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888664.11e-101transcription factor RAX2
TrEMBLA0A059PSS20.0A0A059PSS2_SALMI; MYB-related transcription factor
STRINGXP_009612981.14e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-68myb domain protein 36