PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011181-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CO-like
Protein Properties Length: 341aa    MW: 39038 Da    PI: 5.9269
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011181-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-082669340
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           +r C+ +  k++++fC  ++ +lC++C  + H+       H++v
  SMil_00011181-RA_Salv 26 ARACDSCLLKRARWFCAADDAFLCQSCDAAVHSAnqlasrHERV 69
                           578*****************************667888888876 PP
2CCT644.5e-22293336144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea++ RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk++
  SMil_00011181-RA_Salv 293 REARVCRYREKRRRRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 336
                            9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-112471IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8932471IPR000315B-box-type zinc finger
PfamPF006435.5E-72669IPR000315B-box-type zinc finger
CDDcd000211.84E-82771No hitNo description
PfamPF062036.5E-17293335IPR010402CCT domain
PROSITE profilePS5101715.864293335IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
LLATLIPPQN QNMNINASNV LGGKTARACD SCLLKRARWF CAADDAFLCQ SCDAAVHSAN  60
QLASRHERVR LETSSCKLPT APSWHQGFTK KARTPRHAKP WSRPAPNHQL PVVPEMSSDD  120
PFQEETDEQL FCRVPVLEEQ LGFGSSVFDD DHELNLEELL SSCDDEFAAD VESLLGNGID  180
GLTMRDEKRV KVEDDDAMAC HFDPAMELIN WELDFPSEEG GEEEMRVTVK KDIEMESSES  240
RKLLRLNYEA VMAAWDSQGS PWTDGVRPQF NLDEFMGAWL DEWGKGGRRD AGREARVCRY  300
REKRRRRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTTHSF L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307KRRRRL
2304319RRRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072947.11e-124zinc finger protein CONSTANS-LIKE 6
SwissprotQ8RWD09e-75COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A4D8ZRF51e-152A0A4D8ZRF5_SALSN; Uncharacterized protein
STRINGMigut.I00345.1.p2e-98(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-61B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]