PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011037-RA_Salv | ||||||||
Common Name | MYB41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24911.9 Da PI: 8.2202 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G ++W+ Ia+ g++Rt+k+c++rw +yl SMil_00011037-RA_Salv 11 KGPWTEEEDAQLVFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.4e-17 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ SMil_00011037-RA_Salv 64 RGKMTPHEERLVLQLHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 109 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.599 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-22 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-10 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.983 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 64 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.32E-11 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MMEKEDSTMR KGPWTEEEDA QLVFYVNLFG DRRWDFIAKV SGLKRTGKSC RLRWVNYLHP 60 GLKRGKMTPH EERLVLQLHS KWGNRWSRIA RKIPGRTDNE IKNYWRTHMR KKAQDQKKKS 120 IAQSSSSSSS SSSTKGPSFY DTGGDNKSKT GAEEVYSMDE IWKDIELCEE SSSFTPLAWD 180 FPTDDSLWAV DEEEPKMLIA HQYDSFPFDN HMTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-29 | 11 | 113 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-28 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-28 | 11 | 113 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-28 | 9 | 113 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-29 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-29 | 11 | 113 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059395 | 0.0 | KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089426.1 | 2e-98 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 1e-75 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059PRJ4 | 1e-159 | A0A059PRJ4_SALMI; MYB-related transcription factor | ||||
STRING | XP_004487036.1 | 5e-85 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 7e-76 | myb domain protein 48 |