PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00011019-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WOX

Protein Properties

Length: 263aa MW: 29728.3 Da PI: 5.0662

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011019-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1.1e-20	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e++++l +++e++V++WFqNrRa+ k+ SMil_00011019-RA_Salv 84 RQRWTPTPMQLQILERIFDQgIGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 144 89***************99************************************97 PP
2	Wus_type_Homeobox	103.8	1.1e-33	84	146	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SMil_00011019-RA_Salv 84 RQRWTPTPMQLQILERIFDQGIGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 146 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	79	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.463	80	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-18	82	149	IPR009057	Homeodomain-like
SMART	SM00389	3.8E-14	82	149	IPR001356	Homeobox domain
CDD	cd00086	5.46E-13	84	146	No hit	No description
Pfam	PF00046	1.6E-18	84	144	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEWEKQPPQQ AEEPGGGGGM FVKVMTDEQM EVLRKQIAVY ATICEQLVEL HKSLTSQTDL 60 AGVRLGNLYC DPLITSGAHK ITGRQRWTPT PMQLQILERI FDQGIGTPSK QKIKEITSEL 120 SQHGQISETN VYNWFQNRRA RSKRKQQAAP SNNAESEVET EVESPNEKKT KPEEFQPQQI 180 LTSRPEDLCF QTSSAIHSVD PRTSKPEPML PPEGSSKFGG NFGEMSFYGN MLSNPRMDQF 240 IGKIEVPGNY NPYLQQEDYN MDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099896.1	1e-166	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-94	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D8YII2	1e-178	A0A4D8YII2_SALSN; Uncharacterized protein
STRING	Migut.H02206.1.p	1e-144	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-77	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]